GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM683776 Query DataSets for GSM683776
Status Public on Mar 01, 2011
Title Myers_LNCaP_2_androgen_Duke
Sample type SRA
Source name LNCaP
Organism Homo sapiens
Characteristics cell: LNCaP
cell organism: Human
cell description: prostate adenocarcinoma
cell karyotype: cancer
cell lineage: "LNCaP clone FGC was isolated in 1977 by J.S. Horoszewicz, et al., from a needle aspiration biopsy of the left supraclavicular lymph node of a 50-year-old Caucasian male (blood type B+) with confirmed diagnosis of metastatic prostate carcinoma." - ATCC
cell sex: M
replicate: 2
treatment: androgen
treatment description: 12hrs, 1nM Methyltrienolone (R1881) (Crawford)
obtainedby: Duke
Biomaterial provider ATCC
Growth protocol Cells were grown according to ENCODE cell culture protocols: Yale_TFBS(Farnham):LNCaP_protocol.pdf UW_Stam:LNCaP_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For extraction protocol details see:
Library strategy Bisulfite-Seq
Library source genomic
Library selection Reduced Representation
Instrument model Illumina Genome Analyzer IIx
Description Reduced Representation
Data processing For data processing details see:
Submission date Mar 01, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL10999
Series (1)
GSE27584 DNA Methylation by Reduced Representation Bisulfite Seq from ENCODE/HudsonAlpha
SRA SRX066276
BioSample SAMN00621758

Supplementary file Size Download File type/resource
GSM683776_hg19_wgEncodeHaibMethylRrbsLncapAndroDukeSitesRep2.bedRrbs.gz 16.5 Mb (ftp)(http) BEDRRBS
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data are available in SRA

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap