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Sample GSM67280 Query DataSets for GSM67280
Status Public on Dec 05, 2005
Title day 1 slide 7
Sample type RNA
 
Channel 1
Source name jejunum fast salmonella d1
Organism Gallus gallus
Characteristics tissue: jejunum
infection: salmonella
Extracted molecule total RNA
Label cy3
 
Channel 2
Source name jejunum slow salmonella d1
Organism Gallus gallus
Characteristics tissue: jejunum
infection: salmonella
Extracted molecule total RNA
Label cy5
 
 
Description comparison 2 chicken lines
Data processing genepix pro
 
Submission date Aug 05, 2005
Last update date Aug 16, 2005
Contact name Saskia van Hemert
E-mail(s) saskia.vanhemert@wur.nl
Organization name Animal Sciences Group
Street address PO box 65
City Lelystad
ZIP/Postal code 8200 AB
Country Netherlands
 
Platform ID GPL2719
Series (2)
GSE3066 Gene expression responses to a Salmonella infection in the chicken intestine differ between lines.
GSE3702 Early gene expression responses to a Salmonella infection in the chicken intestine

Data table header descriptions
ID_REF
Dia.
F532 Median
F532 Mean
F532 SD
F532 CV
B532
B532 Median
B532 Mean
B532 SD
B532 CV
% > B532+1SD
% > B532+2SD
F532 % Sat.
F635 Median
F635 Mean
F635 SD
F635 CV
B635
B635 Median
B635 Mean
B635 SD
B635 CV
% > B635+1SD
% > B635+2SD
F635 % Sat.
Ratio of Medians (635/532)
Ratio of Means (635/532)
Median of Ratios (635/532)
Mean of Ratios (635/532)
Ratios SD (635/532)
Rgn Ratio (635/532)
Rgn R2 (635/532)
F Pixels
B Pixels
Circularity
Sum of Medians (635/532)
Sum of Means (635/532)
VALUE
F532 Median - B532
F635 Median - B635
F532 Mean - B532
F635 Mean - B635
F532 Total Intensity
F635 Total Intensity
SNR 532
SNR 635
Flags
Normalize
Autoflag

Data table
ID_REF Dia. F532 Median F532 Mean F532 SD F532 CV B532 B532 Median B532 Mean B532 SD B532 CV % > B532+1SD % > B532+2SD F532 % Sat. F635 Median F635 Mean F635 SD F635 CV B635 B635 Median B635 Mean B635 SD B635 CV % > B635+1SD % > B635+2SD F635 % Sat. Ratio of Medians (635/532) Ratio of Means (635/532) Median of Ratios (635/532) Mean of Ratios (635/532) Ratios SD (635/532) Rgn Ratio (635/532) Rgn R2 (635/532) F Pixels B Pixels Circularity Sum of Medians (635/532) Sum of Means (635/532) VALUE F532 Median - B532 F635 Median - B635 F532 Mean - B532 F635 Mean - B635 F532 Total Intensity F635 Total Intensity SNR 532 SNR 635 Flags Normalize Autoflag
19_28S 100 391 459 250 54 354 354 387 182 47 26 13 0 158 163 46 28 142 142 147 38 26 18 7 0 0.41 0.198 0.173 0.166 1.299 1.969 0 80 1000 100 52 124 -1.287 37 15 104 20 36687 13076 0.393 0.405 -50 1 0
20_28S 100 302 356 206 57 261 261 300 150 50 30 11 0 143 149 27 18 148 148 157 120 76 0 0 0 -0.111 0.014 0.269 0.286 0.669 4.47 0 80 1019 100 37 96 null 41 -4 95 1 28644 11979 0.377 -0.061 -50 1 0
21_28S 100 383 515 703 136 326 326 374 208 55 22 10 0 141 153 81 52 130 130 136 42 31 16 6 0 0.195 0.126 0.138 0.173 0.878 0.024 0.01 80 998 100 67 212 -2.36 56 11 189 23 41239 12300 0.677 0.409 -50 1 0
22_28S 140 2627 3178 1924 60 328 328 380 609 160 96 87 0 240 248 65 26 148 148 152 34 22 85 64 0 0.04 0.035 0.036 0.036 0.538 0.025 0.327 156 1446 100 2389 2949 -4.645 2298 91 2849 100 495830 38826 4.589 2.75 0 1 0
23_28S 120 3223 3532 1724 48 300 300 341 169 49 100 99 0 249 262 75 28 143 143 148 36 24 91 71 0 0.036 0.037 0.035 0.034 0.53 0.026 0.322 120 1104 100 3028 3350 -4.79 2923 105 3232 118 423965 31534 18.795 3.139 0 1 0
24_28S 140 4014 4349 2244 51 330 330 374 191 51 100 100 0 226 245 93 38 148 148 154 43 27 76 44 0 0.021 0.024 0.023 0.022 0.475 0.019 0.312 156 1510 100 3761 4115 -5.56 3683 78 4018 97 678313 38365 20.75 2.106 0 1 0
31_CD8 alpha 100 378 424 211 49 350 350 402 232 57 20 7 0 223 237 50 21 202 202 209 54 26 28 8 0 0.747 0.478 0.244 0.239 0.933 0.249 0.015 80 933 100 49 109 -0.421 28 21 74 35 33892 19019 0.093 0.529 -50 1 0
32_CD8 alpha 100 376 424 206 48 400 400 457 248 54 13 3 0 236 243 54 22 210 210 215 45 21 28 12 0 -1.074 1.381 0.245 0.268 0.699 6.431 0.002 80 896 100 2 56 null -23 25 23 33 33927 19505 -0.132 0.61 -50 1 0
33_CD8 alpha 100 393 393 167 42 356 356 402 213 52 13 1 0 180 186 41 22 178 178 182 35 19 18 7 0 0.05 0.211 0.143 0.15 1.176 0.459 0.01 80 889 100 38 44 -4.332 37 1 37 7 31561 14892 -0.041 0.103 -50 1 0
34_CD8 alpha 100 367 446 361 80 302 302 354 217 61 16 8 0 103 107 23 21 97 97 103 32 31 16 3 0 0.098 0.07 0.149 0.114 1.448 42.225 0 80 1159 100 71 153 -3.344 65 6 143 10 35634 8602 0.42 0.129 -50 1 0
35_CD8 alpha 100 411 474 261 55 293 293 339 204 60 33 17 0 213 218 44 20 146 146 152 34 22 78 46 0 0.571 0.402 0.299 0.325 0.773 0.251 0.025 80 1090 100 184 252 -0.809 117 67 180 72 37900 17500 0.66 1.933 -50 1 0
36_CD8 alpha 100 402 435 230 53 317 317 359 163 45 33 13 0 199 209 55 26 136 136 141 32 23 72 50 0 0.747 0.617 0.517 0.409 0.852 0.031 0.004 80 1091 100 147 189 -0.421 84 63 117 72 34896 16736 0.467 2.07 -50 1 0
25_CD8 beta 100 380 468 459 98 324 324 359 169 47 30 15 0 147 150 28 19 142 142 147 33 22 17 5 0 0.097 0.054 0.139 0.113 0.825 0.006 0.001 80 996 100 61 150 -3.36 56 5 143 7 37490 12014 0.641 0.097 -50 1 0
26_CD8 beta 100 341 402 287 71 309 309 370 341 92 10 5 0 170 179 40 22 157 157 164 45 28 17 5 0 0.408 0.231 0.176 0.2 0.689 0.081 0.094 80 994 100 45 114 -1.293 32 13 93 21 32212 14347 0.096 0.33 -50 1 0
27_CD8 beta 100 374 494 398 80 313 313 348 178 51 33 20 0 163 167 33 20 150 150 156 39 25 18 5 0 0.219 0.094 0.118 0.113 1.501 0.008 0.002 80 1051 100 73 196 -2.194 60 13 180 16 39443 13361 0.817 0.276 -50 1 0
28_CD8 beta 100 282 326 148 45 306 306 346 198 57 12 2 0 150 154 25 16 152 152 158 37 23 7 2 0 0.115 0.07 0.153 0.147 0.692 0.006 0 80 1109 100 -25 20 -3.119 -23 -2 19 1 26073 12344 -0.099 -0.099 -50 1 0
29_CD8 beta 100 300 356 213 59 302 302 339 171 50 21 11 0 169 184 46 25 163 163 168 37 22 27 6 0 -2.744 0.38 0.15 0.162 1.131 1.984 0.001 80 1088 100 3 74 null -2 5 54 20 28559 14741 0.101 0.42 -50 1 0
30_CD8 beta 100 306 376 289 76 300 300 337 174 51 17 11 0 155 159 37 23 147 147 151 35 23 22 5 0 1.266 0.157 0.198 0.176 0.974 899.033 0 80 1018 100 14 87 0.341 6 8 76 11 30115 12737 0.225 0.221 -50 1 0
1_EC 1 160 51489 57432 23801 41 670 670 718 328 45 100 100 0 14361 11304 5407 47 192 192 198 45 22 100 100 0 0.279 0.196 0.235 0.164 0.454 0.203 0.654 208 3537 100 64987 67874 -1.843 50819 14168 56762 11112 11946110 2351378 172.543 246.684 -75 1 0
2_EC 1 160 46572 48877 20287 41 568 568 676 1197 176 100 100 0 12735 9918 5196 52 173 173 181 80 44 100 100 0 0.273 0.202 0.231 0.166 0.438 0.216 0.689 208 3411 100 58566 58054 -1.873 46004 12562 48309 9745 10166684 2063062 40.26 120.438 -75 1 0

Total number of rows: 14532

Table truncated, full table size 3220 Kbytes.




Supplementary data files not provided

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