GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM67280
Query DataSets for GSM67280
Status
Public on Dec 05, 2005
Title
day 1 slide 7
Sample type
RNA
Channel 1
Source name
jejunum fast salmonella d1
Organism
Gallus gallus
Characteristics
tissue: jejunum
infection: salmonella
Extracted molecule
total RNA
Label
cy3
Channel 2
Source name
jejunum slow salmonella d1
Organism
Gallus gallus
Characteristics
tissue: jejunum
infection: salmonella
Extracted molecule
total RNA
Label
cy5
Description
comparison 2 chicken lines
Data processing
genepix pro
Submission date
Aug 05, 2005
Last update date
Aug 16, 2005
Contact name
Saskia van Hemert
E-mail(s)
saskia.vanhemert@wur.nl
Organization name
Animal Sciences Group
Street address
PO box 65
City
Lelystad
ZIP/Postal code
8200 AB
Country
Netherlands
Platform ID
GPL2719
Series (2)
GSE3066
Gene expression responses to a Salmonella infection in the chicken intestine differ between lines.
GSE3702
Early gene expression responses to a Salmonella infection in the chicken intestine
Data table header descriptions
ID_REF
Dia.
F532 Median
F532 Mean
F532 SD
F532 CV
B532
B532 Median
B532 Mean
B532 SD
B532 CV
% > B532+1SD
% > B532+2SD
F532 % Sat.
F635 Median
F635 Mean
F635 SD
F635 CV
B635
B635 Median
B635 Mean
B635 SD
B635 CV
% > B635+1SD
% > B635+2SD
F635 % Sat.
Ratio of Medians (635/532)
Ratio of Means (635/532)
Median of Ratios (635/532)
Mean of Ratios (635/532)
Ratios SD (635/532)
Rgn Ratio (635/532)
Rgn R2 (635/532)
F Pixels
B Pixels
Circularity
Sum of Medians (635/532)
Sum of Means (635/532)
VALUE
F532 Median - B532
F635 Median - B635
F532 Mean - B532
F635 Mean - B635
F532 Total Intensity
F635 Total Intensity
SNR 532
SNR 635
Flags
Normalize
Autoflag
Data table
ID_REF
Dia.
F532 Median
F532 Mean
F532 SD
F532 CV
B532
B532 Median
B532 Mean
B532 SD
B532 CV
% > B532+1SD
% > B532+2SD
F532 % Sat.
F635 Median
F635 Mean
F635 SD
F635 CV
B635
B635 Median
B635 Mean
B635 SD
B635 CV
% > B635+1SD
% > B635+2SD
F635 % Sat.
Ratio of Medians (635/532)
Ratio of Means (635/532)
Median of Ratios (635/532)
Mean of Ratios (635/532)
Ratios SD (635/532)
Rgn Ratio (635/532)
Rgn R2 (635/532)
F Pixels
B Pixels
Circularity
Sum of Medians (635/532)
Sum of Means (635/532)
VALUE
F532 Median - B532
F635 Median - B635
F532 Mean - B532
F635 Mean - B635
F532 Total Intensity
F635 Total Intensity
SNR 532
SNR 635
Flags
Normalize
Autoflag
19_28S
100
391
459
250
54
354
354
387
182
47
26
13
0
158
163
46
28
142
142
147
38
26
18
7
0
0.41
0.198
0.173
0.166
1.299
1.969
0
80
1000
100
52
124
-1.287
37
15
104
20
36687
13076
0.393
0.405
-50
1
0
20_28S
100
302
356
206
57
261
261
300
150
50
30
11
0
143
149
27
18
148
148
157
120
76
0
0
0
-0.111
0.014
0.269
0.286
0.669
4.47
0
80
1019
100
37
96
null
41
-4
95
1
28644
11979
0.377
-0.061
-50
1
0
21_28S
100
383
515
703
136
326
326
374
208
55
22
10
0
141
153
81
52
130
130
136
42
31
16
6
0
0.195
0.126
0.138
0.173
0.878
0.024
0.01
80
998
100
67
212
-2.36
56
11
189
23
41239
12300
0.677
0.409
-50
1
0
22_28S
140
2627
3178
1924
60
328
328
380
609
160
96
87
0
240
248
65
26
148
148
152
34
22
85
64
0
0.04
0.035
0.036
0.036
0.538
0.025
0.327
156
1446
100
2389
2949
-4.645
2298
91
2849
100
495830
38826
4.589
2.75
0
1
0
23_28S
120
3223
3532
1724
48
300
300
341
169
49
100
99
0
249
262
75
28
143
143
148
36
24
91
71
0
0.036
0.037
0.035
0.034
0.53
0.026
0.322
120
1104
100
3028
3350
-4.79
2923
105
3232
118
423965
31534
18.795
3.139
0
1
0
24_28S
140
4014
4349
2244
51
330
330
374
191
51
100
100
0
226
245
93
38
148
148
154
43
27
76
44
0
0.021
0.024
0.023
0.022
0.475
0.019
0.312
156
1510
100
3761
4115
-5.56
3683
78
4018
97
678313
38365
20.75
2.106
0
1
0
31_CD8 alpha
100
378
424
211
49
350
350
402
232
57
20
7
0
223
237
50
21
202
202
209
54
26
28
8
0
0.747
0.478
0.244
0.239
0.933
0.249
0.015
80
933
100
49
109
-0.421
28
21
74
35
33892
19019
0.093
0.529
-50
1
0
32_CD8 alpha
100
376
424
206
48
400
400
457
248
54
13
3
0
236
243
54
22
210
210
215
45
21
28
12
0
-1.074
1.381
0.245
0.268
0.699
6.431
0.002
80
896
100
2
56
null
-23
25
23
33
33927
19505
-0.132
0.61
-50
1
0
33_CD8 alpha
100
393
393
167
42
356
356
402
213
52
13
1
0
180
186
41
22
178
178
182
35
19
18
7
0
0.05
0.211
0.143
0.15
1.176
0.459
0.01
80
889
100
38
44
-4.332
37
1
37
7
31561
14892
-0.041
0.103
-50
1
0
34_CD8 alpha
100
367
446
361
80
302
302
354
217
61
16
8
0
103
107
23
21
97
97
103
32
31
16
3
0
0.098
0.07
0.149
0.114
1.448
42.225
0
80
1159
100
71
153
-3.344
65
6
143
10
35634
8602
0.42
0.129
-50
1
0
35_CD8 alpha
100
411
474
261
55
293
293
339
204
60
33
17
0
213
218
44
20
146
146
152
34
22
78
46
0
0.571
0.402
0.299
0.325
0.773
0.251
0.025
80
1090
100
184
252
-0.809
117
67
180
72
37900
17500
0.66
1.933
-50
1
0
36_CD8 alpha
100
402
435
230
53
317
317
359
163
45
33
13
0
199
209
55
26
136
136
141
32
23
72
50
0
0.747
0.617
0.517
0.409
0.852
0.031
0.004
80
1091
100
147
189
-0.421
84
63
117
72
34896
16736
0.467
2.07
-50
1
0
25_CD8 beta
100
380
468
459
98
324
324
359
169
47
30
15
0
147
150
28
19
142
142
147
33
22
17
5
0
0.097
0.054
0.139
0.113
0.825
0.006
0.001
80
996
100
61
150
-3.36
56
5
143
7
37490
12014
0.641
0.097
-50
1
0
26_CD8 beta
100
341
402
287
71
309
309
370
341
92
10
5
0
170
179
40
22
157
157
164
45
28
17
5
0
0.408
0.231
0.176
0.2
0.689
0.081
0.094
80
994
100
45
114
-1.293
32
13
93
21
32212
14347
0.096
0.33
-50
1
0
27_CD8 beta
100
374
494
398
80
313
313
348
178
51
33
20
0
163
167
33
20
150
150
156
39
25
18
5
0
0.219
0.094
0.118
0.113
1.501
0.008
0.002
80
1051
100
73
196
-2.194
60
13
180
16
39443
13361
0.817
0.276
-50
1
0
28_CD8 beta
100
282
326
148
45
306
306
346
198
57
12
2
0
150
154
25
16
152
152
158
37
23
7
2
0
0.115
0.07
0.153
0.147
0.692
0.006
0
80
1109
100
-25
20
-3.119
-23
-2
19
1
26073
12344
-0.099
-0.099
-50
1
0
29_CD8 beta
100
300
356
213
59
302
302
339
171
50
21
11
0
169
184
46
25
163
163
168
37
22
27
6
0
-2.744
0.38
0.15
0.162
1.131
1.984
0.001
80
1088
100
3
74
null
-2
5
54
20
28559
14741
0.101
0.42
-50
1
0
30_CD8 beta
100
306
376
289
76
300
300
337
174
51
17
11
0
155
159
37
23
147
147
151
35
23
22
5
0
1.266
0.157
0.198
0.176
0.974
899.033
0
80
1018
100
14
87
0.341
6
8
76
11
30115
12737
0.225
0.221
-50
1
0
1_EC 1
160
51489
57432
23801
41
670
670
718
328
45
100
100
0
14361
11304
5407
47
192
192
198
45
22
100
100
0
0.279
0.196
0.235
0.164
0.454
0.203
0.654
208
3537
100
64987
67874
-1.843
50819
14168
56762
11112
11946110
2351378
172.543
246.684
-75
1
0
2_EC 1
160
46572
48877
20287
41
568
568
676
1197
176
100
100
0
12735
9918
5196
52
173
173
181
80
44
100
100
0
0.273
0.202
0.231
0.166
0.438
0.216
0.689
208
3411
100
58566
58054
-1.873
46004
12562
48309
9745
10166684
2063062
40.26
120.438
-75
1
0
Total number of rows:
14532
Table truncated, full table size
3220 Kbytes
.
Supplementary data files not provided
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|