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Sample GSM67276 Query DataSets for GSM67276
Status Public on Dec 05, 2005
Title day 1 slide 3
Sample type RNA
 
Channel 1
Source name jejunum slow control d1
Organism Gallus gallus
Characteristics tissue: jejunum
infection: control
Extracted molecule total RNA
Label cy3
 
Channel 2
Source name jejunum slow salmonella d1
Organism Gallus gallus
Characteristics tissue: jejunum
infection: salmonella
Extracted molecule total RNA
Label cy5
 
 
Description comparison 2 chicken lines
Data processing genepix pro
 
Submission date Aug 05, 2005
Last update date Aug 16, 2005
Contact name Saskia van Hemert
E-mail(s) saskia.vanhemert@wur.nl
Organization name Animal Sciences Group
Street address PO box 65
City Lelystad
ZIP/Postal code 8200 AB
Country Netherlands
 
Platform ID GPL2719
Series (2)
GSE3066 Gene expression responses to a Salmonella infection in the chicken intestine differ between lines.
GSE3702 Early gene expression responses to a Salmonella infection in the chicken intestine

Data table header descriptions
ID_REF
Dia.
F532 Median
F532 Mean
F532 SD
F532 CV
B532
B532 Median
B532 Mean
B532 SD
B532 CV
% > B532+1SD
% > B532+2SD
F532 % Sat.
F635 Median
F635 Mean
F635 SD
F635 CV
B635
B635 Median
B635 Mean
B635 SD
B635 CV
% > B635+1SD
% > B635+2SD
F635 % Sat.
Ratio of Medians (635/532)
Ratio of Means (635/532)
Median of Ratios (635/532)
Mean of Ratios (635/532)
Ratios SD (635/532)
Rgn Ratio (635/532)
Rgn R2 (635/532)
F Pixels
B Pixels
Circularity
Sum of Medians (635/532)
Sum of Means (635/532)
VALUE
F532 Median - B532
F635 Median - B635
F532 Mean - B532
F635 Mean - B635
F532 Total Intensity
F635 Total Intensity
SNR 532
SNR 635
Flags
Normalize
Autoflag

Data table
ID_REF Dia. F532 Median F532 Mean F532 SD F532 CV B532 B532 Median B532 Mean B532 SD B532 CV % > B532+1SD % > B532+2SD F532 % Sat. F635 Median F635 Mean F635 SD F635 CV B635 B635 Median B635 Mean B635 SD B635 CV % > B635+1SD % > B635+2SD F635 % Sat. Ratio of Medians (635/532) Ratio of Means (635/532) Median of Ratios (635/532) Mean of Ratios (635/532) Ratios SD (635/532) Rgn Ratio (635/532) Rgn R2 (635/532) F Pixels B Pixels Circularity Sum of Medians (635/532) Sum of Means (635/532) VALUE F532 Median - B532 F635 Median - B635 F532 Mean - B532 F635 Mean - B635 F532 Total Intensity F635 Total Intensity SNR 532 SNR 635 Flags Normalize Autoflag
19_28S 100 270 306 153 50 221 221 246 110 44 35 8 0 203 216 58 26 187 187 190 37 19 26 12 0 0.346 0.348 0.292 0.318 1.075 2.431 0.001 80 975 100 64 114 -1.532 48 16 85 29 24556 17316 0.538 0.688 -50 1 0
20_28S 100 229 259 127 49 204 204 225 91 40 28 11 0 195 207 48 23 192 192 197 50 25 13 2 0 0.129 0.272 0.505 0.471 0.989 3.845 0.007 80 951 100 28 70 -2.956 25 3 55 15 20837 16600 0.372 0.187 -50 1 0
21_28S 100 242 287 153 53 229 229 248 99 40 17 11 0 213 225 48 21 210 210 213 39 18 21 11 0 0.258 0.262 0.393 0.358 1.005 1.286 0.027 80 934 100 15 72 -1.956 12 3 57 15 22903 17993 0.383 0.282 -50 1 0
22_28S 150 1759 1893 1072 56 223 223 246 117 47 99 96 0 594 626 207 33 195 195 202 43 21 100 98 0 0.259 0.258 0.274 0.29 0.466 0.247 0.618 156 1944 100 1934 2100 -1.948 1536 398 1670 430 295508 97741 14.073 9.699 -75 1 0
23_28S 130 838 925 389 42 208 208 240 340 141 86 42 0 369 381 96 25 186 186 189 38 20 99 95 0 0.291 0.272 0.289 0.284 0.467 0.296 0.41 120 1299 100 812 911 -1.781 629 183 716 195 110962 45800 2.013 5.049 -75 1 0
24_28S 160 2429 2653 1446 54 246 246 274 136 49 98 96 0 839 870 355 40 207 207 214 47 22 99 97 0 0.29 0.275 0.279 0.292 0.409 0.272 0.772 208 2138 100 2814 3068 -1.788 2182 632 2406 662 551739 180998 17.469 13.667 -75 1 0
31_CD8 alpha 100 491 506 236 46 359 359 414 421 101 7 1 0 322 329 57 17 286 286 303 91 30 17 2 0 0.274 0.291 0.327 0.283 0.755 1.182 0.019 80 817 100 167 188 -1.866 131 36 146 42 40540 26322 0.217 0.277 -50 1 0
32_CD8 alpha 100 516 619 376 60 359 359 385 172 44 47 23 0 336 363 131 36 308 308 322 67 20 30 12 0 0.173 0.212 0.312 0.273 1.235 2.734 0.004 80 788 100 184 313 -2.53 157 27 259 54 49516 29113 1.358 0.611 -50 1 0
33_CD8 alpha 100 372 423 202 47 338 338 380 238 62 12 3 0 322 330 57 17 297 297 308 65 21 20 6 0 0.732 0.387 0.308 0.363 0.943 1.976 0.004 80 788 100 58 117 -0.45 34 24 85 32 33951 26458 0.179 0.336 -50 1 0
34_CD8 alpha 140 1006 1074 536 49 231 231 253 104 41 99 93 0 482 507 155 30 169 169 178 42 23 98 96 0 0.405 0.401 0.426 0.439 0.481 0.432 0.435 156 1918 100 1087 1179 -1.305 774 313 842 337 167685 79090 7.878 7.681 -75 1 0
35_CD8 alpha 150 751 823 374 45 238 238 261 110 42 94 85 0 498 526 158 30 210 210 219 51 23 98 96 0 0.561 0.541 0.601 0.597 0.55 0.701 0.343 156 2098 100 799 901 -0.834 512 287 585 316 128574 82180 5.077 5.945 -75 1 0
36_CD8 alpha 140 542 602 270 44 234 234 257 104 40 87 69 0 379 400 134 33 210 210 216 42 19 91 77 0 0.55 0.517 0.57 0.533 0.717 0.847 0.25 156 1900 100 477 558 -0.862 308 169 368 190 93772 62485 3.306 4.344 -75 1 0
25_CD8 beta 100 242 268 102 38 223 223 238 82 34 28 10 0 191 197 34 17 197 197 201 40 20 8 3 0 -0.344 -0.011 0.465 0.44 1.425 1.28 0.014 80 891 100 13 44 null 19 -6 44 0 21501 15810 0.359 -0.105 -50 1 0
26_CD8 beta 100 251 280 106 37 234 234 257 104 40 22 7 0 201 210 38 18 202 202 211 58 27 15 0 0 -0.055 0.171 0.506 0.497 1.258 3.565 0.001 80 817 100 17 53 null 17 0 46 7 22454 16831 0.224 -0.016 -50 1 0
27_CD8 beta 100 285 331 185 55 234 234 253 97 38 36 17 0 215 226 41 18 195 195 202 44 22 31 8 0 0.387 0.307 0.357 0.366 1.048 0.307 0.006 80 870 100 70 127 -1.371 51 19 97 30 26562 18080 0.804 0.537 -50 1 0
28_CD8 beta 100 272 304 163 53 244 244 263 102 38 21 6 0 239 262 69 26 225 225 233 48 20 32 11 0 0.51 0.623 0.488 0.459 1.265 2.747 0.019 80 891 100 41 96 -0.972 27 14 59 37 24366 20998 0.396 0.596 -50 1 0
29_CD8 beta 100 293 329 134 40 265 265 280 106 37 28 8 0 262 285 138 48 257 257 263 47 18 18 5 0 0.187 0.449 0.402 0.345 1.093 4.494 0.012 80 777 100 32 91 -2.419 27 5 63 28 26339 22844 0.46 0.471 -50 1 0
30_CD8 beta 100 259 282 121 42 234 234 255 99 39 22 8 0 217 223 31 14 221 221 226 43 19 8 1 0 -0.147 0.048 0.284 0.316 1.06 3.292 0.001 80 913 100 22 50 null 25 -3 48 2 22711 17885 0.277 -0.065 -50 1 0
1_EC 1 150 34072 32781 7491 22 287 287 306 110 36 100 100 0 15514 14435 3302 22 237 237 243 45 18 100 100 0 0.452 0.437 0.447 0.44 0.274 0.437 0.898 156 2906 100 49061 46691 -1.145 33785 15276 32494 14197 5113735 2251902 293.538 311.278 -75 1 0
2_EC 1 160 25934 24020 6572 27 306 306 338 157 46 100 100 0 15794 13294 4967 37 287 287 297 80 27 100 100 0 0.605 0.549 0.586 0.494 0.349 0.594 0.916 208 2820 100 41134 36720 -0.725 25628 15506 23713 13007 4996098 2765239 150.419 160.767 -75 1 0

Total number of rows: 14532

Table truncated, full table size 3254 Kbytes.




Supplementary data files not provided

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