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GEO accession:
Sample GSM67276
Query DataSets for GSM67276
Status
Public on Dec 05, 2005
Title
day 1 slide 3
Sample type
RNA
Channel 1
Source name
jejunum slow control d1
Organism
Gallus gallus
Characteristics
tissue: jejunum
infection: control
Extracted molecule
total RNA
Label
cy3
Channel 2
Source name
jejunum slow salmonella d1
Organism
Gallus gallus
Characteristics
tissue: jejunum
infection: salmonella
Extracted molecule
total RNA
Label
cy5
Description
comparison 2 chicken lines
Data processing
genepix pro
Submission date
Aug 05, 2005
Last update date
Aug 16, 2005
Contact name
Saskia van Hemert
E-mail(s)
saskia.vanhemert@wur.nl
Organization name
Animal Sciences Group
Street address
PO box 65
City
Lelystad
ZIP/Postal code
8200 AB
Country
Netherlands
Platform ID
GPL2719
Series (2)
GSE3066
Gene expression responses to a Salmonella infection in the chicken intestine differ between lines.
GSE3702
Early gene expression responses to a Salmonella infection in the chicken intestine
Data table header descriptions
ID_REF
Dia.
F532 Median
F532 Mean
F532 SD
F532 CV
B532
B532 Median
B532 Mean
B532 SD
B532 CV
% > B532+1SD
% > B532+2SD
F532 % Sat.
F635 Median
F635 Mean
F635 SD
F635 CV
B635
B635 Median
B635 Mean
B635 SD
B635 CV
% > B635+1SD
% > B635+2SD
F635 % Sat.
Ratio of Medians (635/532)
Ratio of Means (635/532)
Median of Ratios (635/532)
Mean of Ratios (635/532)
Ratios SD (635/532)
Rgn Ratio (635/532)
Rgn R2 (635/532)
F Pixels
B Pixels
Circularity
Sum of Medians (635/532)
Sum of Means (635/532)
VALUE
F532 Median - B532
F635 Median - B635
F532 Mean - B532
F635 Mean - B635
F532 Total Intensity
F635 Total Intensity
SNR 532
SNR 635
Flags
Normalize
Autoflag
Data table
ID_REF
Dia.
F532 Median
F532 Mean
F532 SD
F532 CV
B532
B532 Median
B532 Mean
B532 SD
B532 CV
% > B532+1SD
% > B532+2SD
F532 % Sat.
F635 Median
F635 Mean
F635 SD
F635 CV
B635
B635 Median
B635 Mean
B635 SD
B635 CV
% > B635+1SD
% > B635+2SD
F635 % Sat.
Ratio of Medians (635/532)
Ratio of Means (635/532)
Median of Ratios (635/532)
Mean of Ratios (635/532)
Ratios SD (635/532)
Rgn Ratio (635/532)
Rgn R2 (635/532)
F Pixels
B Pixels
Circularity
Sum of Medians (635/532)
Sum of Means (635/532)
VALUE
F532 Median - B532
F635 Median - B635
F532 Mean - B532
F635 Mean - B635
F532 Total Intensity
F635 Total Intensity
SNR 532
SNR 635
Flags
Normalize
Autoflag
19_28S
100
270
306
153
50
221
221
246
110
44
35
8
0
203
216
58
26
187
187
190
37
19
26
12
0
0.346
0.348
0.292
0.318
1.075
2.431
0.001
80
975
100
64
114
-1.532
48
16
85
29
24556
17316
0.538
0.688
-50
1
0
20_28S
100
229
259
127
49
204
204
225
91
40
28
11
0
195
207
48
23
192
192
197
50
25
13
2
0
0.129
0.272
0.505
0.471
0.989
3.845
0.007
80
951
100
28
70
-2.956
25
3
55
15
20837
16600
0.372
0.187
-50
1
0
21_28S
100
242
287
153
53
229
229
248
99
40
17
11
0
213
225
48
21
210
210
213
39
18
21
11
0
0.258
0.262
0.393
0.358
1.005
1.286
0.027
80
934
100
15
72
-1.956
12
3
57
15
22903
17993
0.383
0.282
-50
1
0
22_28S
150
1759
1893
1072
56
223
223
246
117
47
99
96
0
594
626
207
33
195
195
202
43
21
100
98
0
0.259
0.258
0.274
0.29
0.466
0.247
0.618
156
1944
100
1934
2100
-1.948
1536
398
1670
430
295508
97741
14.073
9.699
-75
1
0
23_28S
130
838
925
389
42
208
208
240
340
141
86
42
0
369
381
96
25
186
186
189
38
20
99
95
0
0.291
0.272
0.289
0.284
0.467
0.296
0.41
120
1299
100
812
911
-1.781
629
183
716
195
110962
45800
2.013
5.049
-75
1
0
24_28S
160
2429
2653
1446
54
246
246
274
136
49
98
96
0
839
870
355
40
207
207
214
47
22
99
97
0
0.29
0.275
0.279
0.292
0.409
0.272
0.772
208
2138
100
2814
3068
-1.788
2182
632
2406
662
551739
180998
17.469
13.667
-75
1
0
31_CD8 alpha
100
491
506
236
46
359
359
414
421
101
7
1
0
322
329
57
17
286
286
303
91
30
17
2
0
0.274
0.291
0.327
0.283
0.755
1.182
0.019
80
817
100
167
188
-1.866
131
36
146
42
40540
26322
0.217
0.277
-50
1
0
32_CD8 alpha
100
516
619
376
60
359
359
385
172
44
47
23
0
336
363
131
36
308
308
322
67
20
30
12
0
0.173
0.212
0.312
0.273
1.235
2.734
0.004
80
788
100
184
313
-2.53
157
27
259
54
49516
29113
1.358
0.611
-50
1
0
33_CD8 alpha
100
372
423
202
47
338
338
380
238
62
12
3
0
322
330
57
17
297
297
308
65
21
20
6
0
0.732
0.387
0.308
0.363
0.943
1.976
0.004
80
788
100
58
117
-0.45
34
24
85
32
33951
26458
0.179
0.336
-50
1
0
34_CD8 alpha
140
1006
1074
536
49
231
231
253
104
41
99
93
0
482
507
155
30
169
169
178
42
23
98
96
0
0.405
0.401
0.426
0.439
0.481
0.432
0.435
156
1918
100
1087
1179
-1.305
774
313
842
337
167685
79090
7.878
7.681
-75
1
0
35_CD8 alpha
150
751
823
374
45
238
238
261
110
42
94
85
0
498
526
158
30
210
210
219
51
23
98
96
0
0.561
0.541
0.601
0.597
0.55
0.701
0.343
156
2098
100
799
901
-0.834
512
287
585
316
128574
82180
5.077
5.945
-75
1
0
36_CD8 alpha
140
542
602
270
44
234
234
257
104
40
87
69
0
379
400
134
33
210
210
216
42
19
91
77
0
0.55
0.517
0.57
0.533
0.717
0.847
0.25
156
1900
100
477
558
-0.862
308
169
368
190
93772
62485
3.306
4.344
-75
1
0
25_CD8 beta
100
242
268
102
38
223
223
238
82
34
28
10
0
191
197
34
17
197
197
201
40
20
8
3
0
-0.344
-0.011
0.465
0.44
1.425
1.28
0.014
80
891
100
13
44
null
19
-6
44
0
21501
15810
0.359
-0.105
-50
1
0
26_CD8 beta
100
251
280
106
37
234
234
257
104
40
22
7
0
201
210
38
18
202
202
211
58
27
15
0
0
-0.055
0.171
0.506
0.497
1.258
3.565
0.001
80
817
100
17
53
null
17
0
46
7
22454
16831
0.224
-0.016
-50
1
0
27_CD8 beta
100
285
331
185
55
234
234
253
97
38
36
17
0
215
226
41
18
195
195
202
44
22
31
8
0
0.387
0.307
0.357
0.366
1.048
0.307
0.006
80
870
100
70
127
-1.371
51
19
97
30
26562
18080
0.804
0.537
-50
1
0
28_CD8 beta
100
272
304
163
53
244
244
263
102
38
21
6
0
239
262
69
26
225
225
233
48
20
32
11
0
0.51
0.623
0.488
0.459
1.265
2.747
0.019
80
891
100
41
96
-0.972
27
14
59
37
24366
20998
0.396
0.596
-50
1
0
29_CD8 beta
100
293
329
134
40
265
265
280
106
37
28
8
0
262
285
138
48
257
257
263
47
18
18
5
0
0.187
0.449
0.402
0.345
1.093
4.494
0.012
80
777
100
32
91
-2.419
27
5
63
28
26339
22844
0.46
0.471
-50
1
0
30_CD8 beta
100
259
282
121
42
234
234
255
99
39
22
8
0
217
223
31
14
221
221
226
43
19
8
1
0
-0.147
0.048
0.284
0.316
1.06
3.292
0.001
80
913
100
22
50
null
25
-3
48
2
22711
17885
0.277
-0.065
-50
1
0
1_EC 1
150
34072
32781
7491
22
287
287
306
110
36
100
100
0
15514
14435
3302
22
237
237
243
45
18
100
100
0
0.452
0.437
0.447
0.44
0.274
0.437
0.898
156
2906
100
49061
46691
-1.145
33785
15276
32494
14197
5113735
2251902
293.538
311.278
-75
1
0
2_EC 1
160
25934
24020
6572
27
306
306
338
157
46
100
100
0
15794
13294
4967
37
287
287
297
80
27
100
100
0
0.605
0.549
0.586
0.494
0.349
0.594
0.916
208
2820
100
41134
36720
-0.725
25628
15506
23713
13007
4996098
2765239
150.419
160.767
-75
1
0
Total number of rows:
14532
Table truncated, full table size
3254 Kbytes
.
Supplementary data files not provided
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