|
Status |
Public on Jul 23, 2024 |
Title |
Blood (VDJ) |
Sample type |
SRA |
|
|
Source name |
Meninges
|
Organism |
Mus musculus |
Characteristics |
tissue: Meninges gender: male age: 2 months genotype: C57BL/6
|
Extracted molecule |
total RNA |
Extraction protocol |
10x Genomics Chromium single-cell preparation NGS Illumina Next Seq 5' RNAseq + VDJ
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina NextSeq 500 |
|
|
Description |
RNA was isolated from the meninges of 10 mice.
|
Data processing |
Illumina bcl2fastq software used for basecalling UMI count matrices and VDJ output generated using the Cellranger count and vdj pipelines 3.0.2 Assembly: mm10 Supplementary files format and content: Compressed folders containing the raw UMI count matrices for each sample, as well as matrices with gene symbols and barcodes. Supplementary files format and content: Compressed folders containing the outs directory from cellranger vdj
|
|
|
Submission date |
Oct 26, 2022 |
Last update date |
Jul 23, 2024 |
Contact name |
Jonathan Kipnis |
Organization name |
Washington University in Saint Louis
|
Department |
Pathology and Immunology
|
Lab |
Kipnis Lab
|
Street address |
4515 McKinley Ave
|
City |
Saint Louis |
State/province |
MO |
ZIP/Postal code |
63110 |
Country |
USA |
|
|
Platform ID |
GPL19057 |
Series (2) |
GSE189812 |
Engineered T cell therapy for central nervous system injury [control tissues TCR scRNA-seq] |
GSE216391 |
Engineered T cell therapy for central nervous system injury |
|
Relations |
BioSample |
SAMN31464030 |
SRA |
SRX18035353 |