NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM6685061 Query DataSets for GSM6685061
Status Public on Jul 23, 2024
Title Blood (VDJ)
Sample type SRA
 
Source name Meninges
Organism Mus musculus
Characteristics tissue: Meninges
gender: male
age: 2 months
genotype: C57BL/6
Extracted molecule total RNA
Extraction protocol 10x Genomics Chromium single-cell preparation
NGS Illumina Next Seq
5' RNAseq + VDJ
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NextSeq 500
 
Description RNA was isolated from the meninges of 10 mice.
Data processing Illumina bcl2fastq software used for basecalling
UMI count matrices and VDJ output generated using the Cellranger count and vdj pipelines 3.0.2
Assembly: mm10
Supplementary files format and content: Compressed folders containing the raw UMI count matrices for each sample, as well as matrices with gene symbols and barcodes.
Supplementary files format and content: Compressed folders containing the outs directory from cellranger vdj
 
Submission date Oct 26, 2022
Last update date Jul 23, 2024
Contact name Jonathan Kipnis
Organization name Washington University in Saint Louis
Department Pathology and Immunology
Lab Kipnis Lab
Street address 4515 McKinley Ave
City Saint Louis
State/province MO
ZIP/Postal code 63110
Country USA
 
Platform ID GPL19057
Series (2)
GSE189812 Engineered T cell therapy for central nervous system injury [control tissues TCR scRNA-seq]
GSE216391 Engineered T cell therapy for central nervous system injury
Relations
BioSample SAMN31464030
SRA SRX18035353

Supplementary file Size Download File type/resource
GSM6685061_Blood_VDJ.tar.gz 1.2 Gb (ftp)(http) TAR
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap