|
Status |
Public on Oct 16, 2022 |
Title |
DNase-seq from cerebellum (ENCLB642XAQ) |
Sample type |
SRA |
|
|
Source name |
Mus musculus strain B6CASTF1/J male (4 days) cerebellum tissue
|
Organism |
Mus musculus |
Characteristics |
tissue_type: cerebellum biomaterial_type: tissue description: B6Cast F1 PND4 3x Males 06 cerebellum for Altius Stam core biosample encode accession: ENCBS716FWV (SAMN30347931) Sex: male dev stage: not collected age: 4 day donor_id: ENCDO509HIY lab: Barbara Wold, Caltech source: The Jackson Laboratory link: ENCBS716FWV at ENCODE; https://www.encodeproject.org/ENCBS716FWV/ link: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/
|
Extracted molecule |
genomic DNA |
Extraction protocol |
extraction protocol: https://www.encodeproject.org/documents/980de32c-f7ec-4cd7-b736-61faf723c186/@@download/attachment/newnuclei_isolation_from_human_tissue-combined.pdf
|
|
|
Library strategy |
DNase-Hypersensitivity |
Library source |
genomic |
Library selection |
DNAse |
Instrument model |
Illumina NovaSeq 6000 |
|
|
Description |
https://www.encodeproject.org/experiments/ENCSR181OOF/ *************** biological replicate number: 1 technical replicate number: 1 description: experiment encode accession: ENCSR181OOF assay title: DNase-seq assembly: mm10 encode release date: 2022-08-05 lab: John Stamatoyannopoulos, UW library encode accession: ENCLB642XAQ instrument models: Illumina NovaSeq 6000,Illumina HiSeq 4000
|
Data processing |
See GSM*_README.txt supplementary file linked below
|
|
|
Submission date |
Oct 13, 2022 |
Last update date |
Oct 17, 2022 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL24247 |
Series (1) |
GSE215663 |
DNase-seq from cerebellum (ENCSR181OOF) |
|
Relations |
BioSample |
SAMN30347931 |
SRA |
SRX17911988 |
Supplementary file |
Size |
Download |
File type/resource |
GSM6637923_ENCFF010BRJ_FDR_cut_rate_mm10.bed.gz |
72.5 Mb |
(ftp)(http) |
BED |
GSM6637923_ENCFF054XHO_read-depth_normalized_signal_mm10.bigWig |
586.1 Mb |
(ftp)(http) |
BIGWIG |
GSM6637923_ENCFF112FFZ_footprints_mm10.bed.gz |
757.4 Kb |
(ftp)(http) |
BED |
GSM6637923_ENCFF173ULQ_FDR_cut_rate_mm10.bigBed |
75.7 Mb |
(ftp)(http) |
BIGBED |
GSM6637923_ENCFF313WPW_peaks_mm10.starch |
468.1 Kb |
(ftp)(http) |
STARCH |
GSM6637923_ENCFF337RMI_peaks_mm10.bigBed |
829.4 Kb |
(ftp)(http) |
BIGBED |
GSM6637923_ENCFF345WGQ_peaks_mm10.bigBed |
1.2 Mb |
(ftp)(http) |
BIGBED |
GSM6637923_ENCFF421ZJG_footprints_mm10.bigBed |
1.1 Mb |
(ftp)(http) |
BIGBED |
GSM6637923_ENCFF843ETM_peaks_mm10.bed.gz |
406.9 Kb |
(ftp)(http) |
BED |
GSM6637923_ENCFF881NCQ_peaks_mm10.bed.gz |
673.3 Kb |
(ftp)(http) |
BED |
GSM6637923_ENCLB642XAQ_README.txt.gz |
1.0 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
Raw data are available in SRA |
Processed data provided as supplementary file |