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Sample GSM6637923 Query DataSets for GSM6637923
Status Public on Oct 16, 2022
Title DNase-seq from cerebellum (ENCLB642XAQ)
Sample type SRA
 
Source name Mus musculus strain B6CASTF1/J male (4 days) cerebellum tissue
Organism Mus musculus
Characteristics tissue_type: cerebellum
biomaterial_type: tissue
description: B6Cast F1 PND4 3x Males 06 cerebellum for Altius Stam core
biosample encode accession: ENCBS716FWV (SAMN30347931)
Sex: male
dev stage: not collected
age: 4 day
donor_id: ENCDO509HIY
lab: Barbara Wold, Caltech
source: The Jackson Laboratory
link: ENCBS716FWV at ENCODE; https://www.encodeproject.org/ENCBS716FWV/
link: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/
Extracted molecule genomic DNA
Extraction protocol extraction protocol: https://www.encodeproject.org/documents/980de32c-f7ec-4cd7-b736-61faf723c186/@@download/attachment/newnuclei_isolation_from_human_tissue-combined.pdf
 
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina NovaSeq 6000
 
Description https://www.encodeproject.org/experiments/ENCSR181OOF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR181OOF
assay title: DNase-seq
assembly: mm10
encode release date: 2022-08-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB642XAQ
instrument models: Illumina NovaSeq 6000,Illumina HiSeq 4000
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Oct 13, 2022
Last update date Oct 17, 2022
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL24247
Series (1)
GSE215663 DNase-seq from cerebellum (ENCSR181OOF)
Relations
BioSample SAMN30347931
SRA SRX17911988

Supplementary file Size Download File type/resource
GSM6637923_ENCFF010BRJ_FDR_cut_rate_mm10.bed.gz 72.5 Mb (ftp)(http) BED
GSM6637923_ENCFF054XHO_read-depth_normalized_signal_mm10.bigWig 586.1 Mb (ftp)(http) BIGWIG
GSM6637923_ENCFF112FFZ_footprints_mm10.bed.gz 757.4 Kb (ftp)(http) BED
GSM6637923_ENCFF173ULQ_FDR_cut_rate_mm10.bigBed 75.7 Mb (ftp)(http) BIGBED
GSM6637923_ENCFF313WPW_peaks_mm10.starch 468.1 Kb (ftp)(http) STARCH
GSM6637923_ENCFF337RMI_peaks_mm10.bigBed 829.4 Kb (ftp)(http) BIGBED
GSM6637923_ENCFF345WGQ_peaks_mm10.bigBed 1.2 Mb (ftp)(http) BIGBED
GSM6637923_ENCFF421ZJG_footprints_mm10.bigBed 1.1 Mb (ftp)(http) BIGBED
GSM6637923_ENCFF843ETM_peaks_mm10.bed.gz 406.9 Kb (ftp)(http) BED
GSM6637923_ENCFF881NCQ_peaks_mm10.bed.gz 673.3 Kb (ftp)(http) BED
GSM6637923_ENCLB642XAQ_README.txt.gz 1.0 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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