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Sample GSM6637919 Query DataSets for GSM6637919
Status Public on Oct 16, 2022
Title DNase-seq from cerebellum (ENCLB040TVG)
Sample type SRA
 
Source name Mus musculus strain B6CASTF1/J female (36 days) cerebellum tissue
Organism Mus musculus
Characteristics tissue_type: cerebellum
biomaterial_type: tissue
description: B6Cast F1 PND36 Female 05 cerebellum for Altius Stam core
biosample encode accession: ENCBS679DFS (SAMN30347911)
Sex: female
dev stage: not collected
age: 36 day
donor_id: ENCDO509HIY
lab: Barbara Wold, Caltech
source: The Jackson Laboratory
link: ENCBS679DFS at ENCODE; https://www.encodeproject.org/ENCBS679DFS/
link: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/
Extracted molecule genomic DNA
Extraction protocol extraction protocol: https://www.encodeproject.org/documents/980de32c-f7ec-4cd7-b736-61faf723c186/@@download/attachment/newnuclei_isolation_from_human_tissue-combined.pdf
 
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina NovaSeq 6000
 
Description https://www.encodeproject.org/experiments/ENCSR176CFX/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR176CFX
assay title: DNase-seq
assembly: mm10
encode release date: 2022-02-25
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB040TVG
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Oct 13, 2022
Last update date Oct 17, 2022
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL24247
Series (1)
GSE215659 DNase-seq from cerebellum (ENCSR176CFX)
Relations
BioSample SAMN30347911
SRA SRX17911984

Supplementary file Size Download File type/resource
GSM6637919_ENCFF036BSQ_peaks_mm10.starch 758.1 Kb (ftp)(http) STARCH
GSM6637919_ENCFF095GAA_footprints_mm10.bigBed 2.3 Mb (ftp)(http) BIGBED
GSM6637919_ENCFF159AAT_peaks_mm10.bigBed 1.6 Mb (ftp)(http) BIGBED
GSM6637919_ENCFF565FJI_peaks_mm10.bigBed 1.1 Mb (ftp)(http) BIGBED
GSM6637919_ENCFF657DXK_peaks_mm10.bed.gz 1.0 Mb (ftp)(http) BED
GSM6637919_ENCFF683CWR_FDR_cut_rate_mm10.bigBed 200.0 Mb (ftp)(http) BIGBED
GSM6637919_ENCFF694VYH_footprints_mm10.bed.gz 1.7 Mb (ftp)(http) BED
GSM6637919_ENCFF770OHJ_FDR_cut_rate_mm10.bed.gz 200.8 Mb (ftp)(http) BED
GSM6637919_ENCFF862IKY_peaks_mm10.bed.gz 670.9 Kb (ftp)(http) BED
GSM6637919_ENCFF874BED_read-depth_normalized_signal_mm10.bigWig 557.4 Mb (ftp)(http) BIGWIG
GSM6637919_ENCLB040TVG_README.txt.gz 1.0 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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