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Sample GSM6637682

Query DataSets for GSM6637682

Status

Public on Oct 16, 2022

Title

DNase-seq from spleen (ENCLB862JRG)

Sample type

SRA

Source name

Mus musculus strain B6CASTF1/J male adult (18-20 months) spleen tissue

Organism

Mus musculus

Characteristics

tissue_type: spleen
biomaterial_type: tissue
description: B6Cast F1 DPN18-20months
biosample encode accession: ENCBS434QFK (SAMN30347774)
Sex: male
dev stage: adult
age: 18-20 month
donor_id: ENCDO509HIY
lab: Barbara Wold, Caltech
source: The Jackson Laboratory
link: ENCBS434QFK at ENCODE; https://www.encodeproject.org/ENCBS434QFK/
link: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/

Extracted molecule

genomic DNA

Extraction protocol

extraction protocol: https://www.encodeproject.org/documents/980de32c-f7ec-4cd7-b736-61faf723c186/@@download/attachment/newnuclei_isolation_from_human_tissue-combined.pdf

Library strategy

DNase-Hypersensitivity

Library source

genomic

Library selection

DNAse

Instrument model

Illumina NovaSeq 6000

Description

https://www.encodeproject.org/experiments/ENCSR039FQF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR039FQF
assay title: DNase-seq
assembly: mm10
encode release date: 2022-04-07
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB862JRG

Data processing

See GSM*_README.txt supplementary file linked below

Submission date

Oct 13, 2022

Last update date

Oct 17, 2022

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL24247

Series (1)

GSE215520

DNase-seq from spleen (ENCSR039FQF)

Relations

BioSample

SAMN30347774

SRA

SRX17911754

Supplementary file	Size	Download	File type/resource
GSM6637682_ENCFF106KDM_read-depth_normalized_signal_mm10.bigWig	566.3 Mb	(ftp)(http)	BIGWIG
GSM6637682_ENCFF261RTV_footprints_mm10.bed.gz	1.6 Mb	(ftp)(http)	BED
GSM6637682_ENCFF363XCH_peaks_mm10.bigBed	1.4 Mb	(ftp)(http)	BIGBED
GSM6637682_ENCFF459UOA_footprints_mm10.bigBed	2.0 Mb	(ftp)(http)	BIGBED
GSM6637682_ENCFF655RIB_peaks_mm10.bed.gz	896.9 Kb	(ftp)(http)	BED
GSM6637682_ENCFF707TGX_FDR_cut_rate_mm10.bigBed	170.9 Mb	(ftp)(http)	BIGBED
GSM6637682_ENCFF747DGW_peaks_mm10.starch	684.1 Kb	(ftp)(http)	STARCH
GSM6637682_ENCFF782TPB_FDR_cut_rate_mm10.bed.gz	171.7 Mb	(ftp)(http)	BED
GSM6637682_ENCFF866LXJ_peaks_mm10.bigBed	1.0 Mb	(ftp)(http)	BIGBED
GSM6637682_ENCFF955CWU_peaks_mm10.bed.gz	608.1 Kb	(ftp)(http)	BED
GSM6637682_ENCLB862JRG_README.txt.gz	1.0 Kb	(ftp)(http)	TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file