|
| Status |
Public on Oct 16, 2022 |
| Title |
DNase-seq from right cerebral cortex (ENCLB792GBA) |
| Sample type |
SRA |
| |
|
| Source name |
Mus musculus strain B6CASTF1/J female (14 days) right cerebral cortex tissue
|
| Organism |
Mus musculus |
| Characteristics |
tissue_type: right cerebral cortex
biomaterial_type: tissue
description: B6Cast F1 PND14 Female 05 right cerebral cortex for Altius Stam biobank
biosample encode accession: ENCBS189OPC (SAMN30347604)
Sex: female
dev stage: not collected
age: 14 day
donor_id: ENCDO509HIY
lab: Barbara Wold, Caltech
source: The Jackson Laboratory
link: ENCBS189OPC at ENCODE; https://www.encodeproject.org/ENCBS189OPC/
link: Derived from ENCODE donor ENCDO509HIY; https://www.encodeproject.org/ENCDO509HIY/
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
extraction protocol: https://www.encodeproject.org/documents/980de32c-f7ec-4cd7-b736-61faf723c186/@@download/attachment/newnuclei_isolation_from_human_tissue-combined.pdf
|
| |
|
| Library strategy |
DNase-Hypersensitivity |
| Library source |
genomic |
| Library selection |
DNAse |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Description |
https://www.encodeproject.org/experiments/ENCSR017TAB/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR017TAB
assay title: DNase-seq
assembly: mm10
encode release date: 2022-04-07
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB792GBA
|
| Data processing |
See GSM*_README.txt supplementary file linked below
|
| |
|
| Submission date |
Oct 13, 2022 |
| Last update date |
Oct 17, 2022 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL24247 |
| Series (1) |
| GSE215475 |
DNase-seq from right cerebral cortex (ENCSR017TAB) |
|
| Relations |
| BioSample |
SAMN30347604 |
| SRA |
SRX17911687 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM6637615_ENCFF205RZJ_read-depth_normalized_signal_mm10.bigWig |
549.1 Mb |
(ftp)(http) |
BIGWIG |
| GSM6637615_ENCFF315FWG_peaks_mm10.starch |
888.8 Kb |
(ftp)(http) |
STARCH |
| GSM6637615_ENCFF338EHL_footprints_mm10.bigBed |
1.9 Mb |
(ftp)(http) |
BIGBED |
| GSM6637615_ENCFF421TBL_peaks_mm10.bed.gz |
1.3 Mb |
(ftp)(http) |
BED |
| GSM6637615_ENCFF442HHC_FDR_cut_rate_mm10.bed.gz |
160.7 Mb |
(ftp)(http) |
BED |
| GSM6637615_ENCFF449GCA_peaks_mm10.bed.gz |
802.0 Kb |
(ftp)(http) |
BED |
| GSM6637615_ENCFF565UOC_peaks_mm10.bigBed |
1.4 Mb |
(ftp)(http) |
BIGBED |
| GSM6637615_ENCFF628KOR_peaks_mm10.bigBed |
2.2 Mb |
(ftp)(http) |
BIGBED |
| GSM6637615_ENCFF917BJC_FDR_cut_rate_mm10.bigBed |
165.2 Mb |
(ftp)(http) |
BIGBED |
| GSM6637615_ENCFF961OAP_footprints_mm10.bed.gz |
1.7 Mb |
(ftp)(http) |
BED |
| GSM6637615_ENCLB792GBA_README.txt.gz |
1.0 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
