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Sample GSM663553 Query DataSets for GSM663553
Status Public on Aug 03, 2011
Title retina_2 months_lane_4
Sample type SRA
Source name neural retina
Organism Mus musculus
Characteristics strain: C57BL/6J - 129SvEvTac
tissue: neural retina
age: 2 months
Growth protocol Neural retina from five 2 month old C57BL/6J mice, mixed gender
Extracted molecule total RNA
Extraction protocol RNA-Seq using 5 ug total RNA; insert size 350bp +/- 25bp
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina Genome Analyzer IIx
Data processing 96 million 120bp paired-end sequence reads were obtained from the 4 channels of an Illumina flow cell. The reads were aligned to the mouse transcriptome and genome (mm9) using the RNA-Seq Unified Mapper (RUM).
Submission date Jan 29, 2011
Last update date May 15, 2019
Contact name Eric Pierce
Organization name Massachusetts Eye and Ear Infirmary
Department Ophthalmology
Lab Ocular Genomics Institute
Street address 243 Charles Street
City Boston
State/province MA
ZIP/Postal code 02114
Country USA
Platform ID GPL11002
Series (1)
GSE26248 Comparative Analysis of RNA-Seq Alignment Algorithms and the RNA-Seq Unified Mapper (RUM).
SRA SRX088981
BioSample SAMN00691505

Supplementary file Size Download File type/resource
GSM663553_wildtype4.sam.gz 2.9 Gb (ftp)(http) SAM
GSM663553_wildtype4_non-unique_cov.txt.gz 80.6 Mb (ftp)(http) TXT
GSM663553_wildtype4_unique_cov.txt.gz 132.4 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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