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Sample GSM663553 Query DataSets for GSM663553
Status Public on Aug 03, 2011
Title retina_2 months_lane_4
Sample type SRA
 
Source name neural retina
Organism Mus musculus
Characteristics strain: C57BL/6J - 129SvEvTac
tissue: neural retina
age: 2 months
Growth protocol Neural retina from five 2 month old C57BL/6J mice, mixed gender
Extracted molecule total RNA
Extraction protocol RNA-Seq using 5 ug total RNA; insert size 350bp +/- 25bp
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina Genome Analyzer IIx
 
Data processing 96 million 120bp paired-end sequence reads were obtained from the 4 channels of an Illumina flow cell. The reads were aligned to the mouse transcriptome and genome (mm9) using the RNA-Seq Unified Mapper (RUM).
 
Submission date Jan 29, 2011
Last update date May 15, 2019
Contact name Eric Pierce
E-mail(s) eric_pierce@meei.harvard.edu
URL http://www.masseyeandear.org/research/ophthalmology/laboratories/oculargenomics/
Organization name Massachusetts Eye and Ear Infirmary
Department Ophthalmology
Lab Ocular Genomics Institute
Street address 243 Charles Street
City Boston
State/province MA
ZIP/Postal code 02114
Country USA
 
Platform ID GPL11002
Series (1)
GSE26248 Comparative Analysis of RNA-Seq Alignment Algorithms and the RNA-Seq Unified Mapper (RUM).
Relations
SRA SRX088981
BioSample SAMN00691505

Supplementary file Size Download File type/resource
GSM663553_wildtype4.sam.gz 2.9 Gb (ftp)(http) SAM
GSM663553_wildtype4_non-unique_cov.txt.gz 80.6 Mb (ftp)(http) TXT
GSM663553_wildtype4_unique_cov.txt.gz 132.4 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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