GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM6474926 Query DataSets for GSM6474926
Status Public on Aug 24, 2022
Title KO
Sample type SRA
Source name lung
Organism Mus musculus
Characteristics challenge: House Dust Mite
sorted population: Cell Trace Violet low donor CD4 T cells
host strain: MARCH1-/-
Extracted molecule polyA RNA
Extraction protocol 10x Chromium Next Gem 3' reagent kit (v3.1)
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina MiSeq
Data processing Reads were processed with Cell Ranger v3.1.0
R1 contains barcode at 1-16bp and UMI at bp 17-26
R2 contains the biological sequence
Assembly: mm10
Supplementary files format and content: "barcodes.tsv.gz" contains filtered cellular barcodes, "features.tsv.gz" contains genes, "matrix.mtx.gz" contains the barcoded gene expression matrix
Submission date Aug 17, 2022
Last update date Aug 24, 2022
Contact name Kamir Hiam-Galvez
Organization name Stanford University
Street address 240 Pasteur Drive
City Stanford
ZIP/Postal code 94304
Country USA
Platform ID GPL16417
Series (1)
GSE211511 MARCH1 controls an exhaustion-like program of effector CD4+ T cells promoting allergic airway inflammation
BioSample SAMN30379492
SRA SRX17127778

Supplementary file Size Download File type/resource
GSM6474926_KO_barcodes.tsv.gz 551.0 Kb (ftp)(http) TSV
GSM6474926_KO_features.tsv.gz 254.1 Kb (ftp)(http) TSV
GSM6474926_KO_matrix.mtx.gz 3.2 Mb (ftp)(http) MTX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap