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| Status |
Public on Aug 24, 2022 |
| Title |
WT |
| Sample type |
SRA |
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| Source name |
lung
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| Organism |
Mus musculus |
| Characteristics |
challenge: House Dust Mite
sorted population: Cell Trace Violet low donor CD4 T cells
host strain: C57BL/6
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| Extracted molecule |
polyA RNA |
| Extraction protocol |
10x Chromium Next Gem 3' reagent kit (v3.1)
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina MiSeq |
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| Data processing |
Reads were processed with Cell Ranger v3.1.0
R1 contains barcode at 1-16bp and UMI at bp 17-26
R2 contains the biological sequence
Assembly: mm10
Supplementary files format and content: "barcodes.tsv.gz" contains filtered cellular barcodes, "features.tsv.gz" contains genes, "matrix.mtx.gz" contains the barcoded gene expression matrix
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| Submission date |
Aug 17, 2022 |
| Last update date |
Aug 24, 2022 |
| Contact name |
Kamir Hiam-Galvez |
| E-mail(s) |
khiamg@stanford.edu
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| Organization name |
Stanford University
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| Street address |
240 Pasteur Drive
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| City |
Stanford |
| ZIP/Postal code |
94304 |
| Country |
USA |
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| Platform ID |
GPL16417 |
| Series (1) |
| GSE211511 |
MARCH1 controls an exhaustion-like program of effector CD4+ T cells promoting allergic airway inflammation |
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| Relations |
| BioSample |
SAMN30379493 |
| SRA |
SRX17127777 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM6474925_WT_barcodes.tsv.gz |
756.7 Kb |
(ftp)(http) |
TSV |
| GSM6474925_WT_features.tsv.gz |
254.1 Kb |
(ftp)(http) |
TSV |
| GSM6474925_WT_matrix.mtx.gz |
7.6 Mb |
(ftp)(http) |
MTX |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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