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Sample GSM6474866 Query DataSets for GSM6474866
Status Public on Aug 18, 2022
Title SUBJECT 10 Timepoint 2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics subject: 10
time: 2
treatment: Placebo
Treatment protocol Perfusion with Akkermansia muciniphila or placebo
Growth protocol Healthy human study participants
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Ambion MessageAmp IIbiotin enhanced singleround amplification kit
 
Hybridization protocol Affymetrix GeneChip 3000 7G
Scan protocol Affymetrix GeneChip 3000 7G
Data processing R Bioconductor “oligo” and “pd.hugene.1.1.st.v1” packages
 
Submission date Aug 17, 2022
Last update date Aug 18, 2022
Contact name Robert-Jan Brummer
Organization name Örebro University
Department School of Medical Sciences
Street address Södra Grev Rosengatan 42 A
City Örebro
ZIP/Postal code 70362
Country Sweden
 
Platform ID GPL11532
Series (1)
GSE211506 Gene expression data from Akkermansia perfusion trial

Data table header descriptions
ID_REF
VALUE Bioconductor “oligo” RMA intensities, quantile normalised with “limma”

Data table
ID_REF VALUE
7892501 2.99970743
7892502 3.40562534
7892503 3.027158941
7892504 6.903710072
7892505 2.601382466
7892506 5.08810828
7892507 4.861799792
7892508 5.91856967
7892509 8.862867243
7892510 5.362257022
7892511 3.87187208
7892512 5.693721882
7892513 2.94677286
7892514 10.25268584
7892515 7.16974726
7892516 3.91550089
7892517 5.840042187
7892518 2.003581045
7892519 3.391445
7892520 7.704866721

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM6474866_SUBJ10_Time2.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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