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Sample GSM6474860 Query DataSets for GSM6474860
Status Public on Aug 18, 2022
Title SUBJECT 08 Timepoint 2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics subject: 8
time: 2
treatment: Placebo
Treatment protocol Perfusion with Akkermansia muciniphila or placebo
Growth protocol Healthy human study participants
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Ambion MessageAmp IIbiotin enhanced singleround amplification kit
 
Hybridization protocol Affymetrix GeneChip 3000 7G
Scan protocol Affymetrix GeneChip 3000 7G
Data processing R Bioconductor “oligo” and “pd.hugene.1.1.st.v1” packages
 
Submission date Aug 17, 2022
Last update date Aug 18, 2022
Contact name Robert-Jan Brummer
Organization name Örebro University
Department School of Medical Sciences
Street address Södra Grev Rosengatan 42 A
City Örebro
ZIP/Postal code 70362
Country Sweden
 
Platform ID GPL11532
Series (1)
GSE211506 Gene expression data from Akkermansia perfusion trial

Data table header descriptions
ID_REF
VALUE Bioconductor “oligo” RMA intensities, quantile normalised with “limma”

Data table
ID_REF VALUE
7892501 4.569725808
7892502 3.544333791
7892503 3.904089593
7892504 7.361199831
7892505 2.142956235
7892506 5.06411531
7892507 4.303328117
7892508 6.274163494
7892509 9.131475794
7892510 4.589026448
7892511 3.960549954
7892512 5.784716186
7892513 2.969993583
7892514 10.12097992
7892515 7.608340265
7892516 4.259587366
7892517 5.685224363
7892518 3.728778241
7892519 3.529236651
7892520 7.979738214

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM6474860_SUBJ08_Time2.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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