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Sample GSM6474859 Query DataSets for GSM6474859
Status Public on Aug 18, 2022
Title SUBJECT 08 Timepoint 1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics subject: 8
time: 1
treatment: Placebo
Treatment protocol Perfusion with Akkermansia muciniphila or placebo
Growth protocol Healthy human study participants
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Ambion MessageAmp IIbiotin enhanced singleround amplification kit
 
Hybridization protocol Affymetrix GeneChip 3000 7G
Scan protocol Affymetrix GeneChip 3000 7G
Data processing R Bioconductor “oligo” and “pd.hugene.1.1.st.v1” packages
 
Submission date Aug 17, 2022
Last update date Aug 18, 2022
Contact name Robert-Jan Brummer
Organization name Örebro University
Department School of Medical Sciences
Street address Södra Grev Rosengatan 42 A
City Örebro
ZIP/Postal code 70362
Country Sweden
 
Platform ID GPL11532
Series (1)
GSE211506 Gene expression data from Akkermansia perfusion trial

Data table header descriptions
ID_REF
VALUE Bioconductor “oligo” RMA intensities, quantile normalised with “limma”

Data table
ID_REF VALUE
7892501 2.669899963
7892502 3.452481449
7892503 2.042216682
7892504 7.474598474
7892505 1.812338009
7892506 4.299923214
7892507 3.564507752
7892508 6.040460095
7892509 9.052930932
7892510 4.911559995
7892511 3.595981096
7892512 5.432178911
7892513 3.094225222
7892514 9.970712006
7892515 7.884085064
7892516 3.590125775
7892517 4.567492311
7892518 1.693702925
7892519 3.406317179
7892520 7.786370298

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM6474859_SUBJ08_Time1.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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