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Sample GSM6474858 Query DataSets for GSM6474858
Status Public on Aug 18, 2022
Title SUBJECT 07 Timepoint 3
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics subject: 7
time: 3
treatment: Akkermansia
Treatment protocol Perfusion with Akkermansia muciniphila or placebo
Growth protocol Healthy human study participants
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Ambion MessageAmp IIbiotin enhanced singleround amplification kit
 
Hybridization protocol Affymetrix GeneChip 3000 7G
Scan protocol Affymetrix GeneChip 3000 7G
Data processing R Bioconductor “oligo” and “pd.hugene.1.1.st.v1” packages
 
Submission date Aug 17, 2022
Last update date Aug 18, 2022
Contact name Robert-Jan Brummer
Organization name Örebro University
Department School of Medical Sciences
Street address Södra Grev Rosengatan 42 A
City Örebro
ZIP/Postal code 70362
Country Sweden
 
Platform ID GPL11532
Series (1)
GSE211506 Gene expression data from Akkermansia perfusion trial

Data table header descriptions
ID_REF
VALUE Bioconductor “oligo” RMA intensities, quantile normalised with “limma”

Data table
ID_REF VALUE
7892501 2.532503946
7892502 3.409430286
7892503 3.914453592
7892504 6.765868513
7892505 2.071136862
7892506 4.885633315
7892507 4.432819338
7892508 5.88104304
7892509 8.587420454
7892510 4.630183175
7892511 3.438123075
7892512 5.552467065
7892513 2.863635014
7892514 9.802130349
7892515 7.736592002
7892516 3.755096869
7892517 4.640539247
7892518 2.136606946
7892519 4.132855574
7892520 8.253309718

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM6474858_SUBJ07_Time3.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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