NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM6474857 Query DataSets for GSM6474857
Status Public on Aug 18, 2022
Title SUBJECT 07 Timepoint 2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics subject: 7
time: 2
treatment: Akkermansia
Treatment protocol Perfusion with Akkermansia muciniphila or placebo
Growth protocol Healthy human study participants
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Ambion MessageAmp IIbiotin enhanced singleround amplification kit
 
Hybridization protocol Affymetrix GeneChip 3000 7G
Scan protocol Affymetrix GeneChip 3000 7G
Data processing R Bioconductor “oligo” and “pd.hugene.1.1.st.v1” packages
 
Submission date Aug 17, 2022
Last update date Aug 18, 2022
Contact name Robert-Jan Brummer
Organization name Örebro University
Department School of Medical Sciences
Street address Södra Grev Rosengatan 42 A
City Örebro
ZIP/Postal code 70362
Country Sweden
 
Platform ID GPL11532
Series (1)
GSE211506 Gene expression data from Akkermansia perfusion trial

Data table header descriptions
ID_REF
VALUE Bioconductor “oligo” RMA intensities, quantile normalised with “limma”

Data table
ID_REF VALUE
7892501 2.616515347
7892502 2.971553549
7892503 3.403227362
7892504 6.553393651
7892505 1.966279572
7892506 4.564595937
7892507 4.813350494
7892508 5.804863665
7892509 8.44722448
7892510 5.602875342
7892511 3.691302339
7892512 6.046929485
7892513 2.630984465
7892514 9.676010847
7892515 7.463581433
7892516 4.557905783
7892517 5.129028607
7892518 1.765299794
7892519 3.367409894
7892520 8.08301861

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM6474857_SUBJ07_Time2.CEL.gz 4.1 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap