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Sample GSM6474856 Query DataSets for GSM6474856
Status Public on Aug 18, 2022
Title SUBJECT 07 Timepoint 1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics subject: 7
time: 1
treatment: Akkermansia
Treatment protocol Perfusion with Akkermansia muciniphila or placebo
Growth protocol Healthy human study participants
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Ambion MessageAmp IIbiotin enhanced singleround amplification kit
 
Hybridization protocol Affymetrix GeneChip 3000 7G
Scan protocol Affymetrix GeneChip 3000 7G
Data processing R Bioconductor “oligo” and “pd.hugene.1.1.st.v1” packages
 
Submission date Aug 17, 2022
Last update date Aug 18, 2022
Contact name Robert-Jan Brummer
Organization name Örebro University
Department School of Medical Sciences
Street address Södra Grev Rosengatan 42 A
City Örebro
ZIP/Postal code 70362
Country Sweden
 
Platform ID GPL11532
Series (1)
GSE211506 Gene expression data from Akkermansia perfusion trial

Data table header descriptions
ID_REF
VALUE Bioconductor “oligo” RMA intensities, quantile normalised with “limma”

Data table
ID_REF VALUE
7892501 3.40212427
7892502 3.567523402
7892503 4.356881474
7892504 7.226286223
7892505 2.519604559
7892506 4.245751083
7892507 5.083415151
7892508 6.265288392
7892509 8.46225713
7892510 5.315344077
7892511 3.678180198
7892512 6.178504897
7892513 3.535248693
7892514 9.701264197
7892515 7.48620846
7892516 2.745213903
7892517 5.232146336
7892518 1.668479751
7892519 3.705230681
7892520 7.519077378

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM6474856_SUBJ07_Time1.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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