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Sample GSM6474852 Query DataSets for GSM6474852
Status Public on Aug 18, 2022
Title SUBJECT 05 Timepoint 3
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics subject: 5
time: 3
treatment: Akkermansia
Treatment protocol Perfusion with Akkermansia muciniphila or placebo
Growth protocol Healthy human study participants
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Ambion MessageAmp IIbiotin enhanced singleround amplification kit
 
Hybridization protocol Affymetrix GeneChip 3000 7G
Scan protocol Affymetrix GeneChip 3000 7G
Data processing R Bioconductor “oligo” and “pd.hugene.1.1.st.v1” packages
 
Submission date Aug 17, 2022
Last update date Aug 18, 2022
Contact name Robert-Jan Brummer
Organization name Örebro University
Department School of Medical Sciences
Street address Södra Grev Rosengatan 42 A
City Örebro
ZIP/Postal code 70362
Country Sweden
 
Platform ID GPL11532
Series (1)
GSE211506 Gene expression data from Akkermansia perfusion trial

Data table header descriptions
ID_REF
VALUE Bioconductor “oligo” RMA intensities, quantile normalised with “limma”

Data table
ID_REF VALUE
7892501 2.240161949
7892502 3.203068738
7892503 3.229437378
7892504 6.740453992
7892505 2.05461185
7892506 4.857957767
7892507 4.759260818
7892508 6.291254902
7892509 8.828016432
7892510 4.669698124
7892511 3.509729902
7892512 5.44089866
7892513 2.607560729
7892514 9.956966088
7892515 7.689273416
7892516 3.979312754
7892517 5.445221832
7892518 2.681876362
7892519 3.872594119
7892520 7.928338598

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM6474852_SUBJ05_Time3.CEL.gz 4.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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