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Sample GSM6474850 Query DataSets for GSM6474850
Status Public on Aug 18, 2022
Title SUBJECT 05 Timepoint 1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics subject: 5
time: 1
treatment: Akkermansia
Treatment protocol Perfusion with Akkermansia muciniphila or placebo
Growth protocol Healthy human study participants
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Ambion MessageAmp IIbiotin enhanced singleround amplification kit
 
Hybridization protocol Affymetrix GeneChip 3000 7G
Scan protocol Affymetrix GeneChip 3000 7G
Data processing R Bioconductor “oligo” and “pd.hugene.1.1.st.v1” packages
 
Submission date Aug 17, 2022
Last update date Aug 18, 2022
Contact name Robert-Jan Brummer
Organization name Örebro University
Department School of Medical Sciences
Street address Södra Grev Rosengatan 42 A
City Örebro
ZIP/Postal code 70362
Country Sweden
 
Platform ID GPL11532
Series (1)
GSE211506 Gene expression data from Akkermansia perfusion trial

Data table header descriptions
ID_REF
VALUE Bioconductor “oligo” RMA intensities, quantile normalised with “limma”

Data table
ID_REF VALUE
7892501 2.638075125
7892502 3.231805441
7892503 2.907801395
7892504 6.495213254
7892505 1.930875798
7892506 4.338632083
7892507 5.660959471
7892508 6.587920341
7892509 9.511834523
7892510 5.495299183
7892511 3.637701082
7892512 5.313690165
7892513 3.335958338
7892514 10.15152439
7892515 7.253409514
7892516 2.508860454
7892517 5.777799623
7892518 2.171358001
7892519 3.334110097
7892520 7.707765997

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM6474850_SUBJ05_Time1.CEL.gz 4.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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