NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM6474849 Query DataSets for GSM6474849
Status Public on Aug 18, 2022
Title SUBJECT 04 Timepoint 3
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics subject: 4
time: 3
treatment: Akkermansia
Treatment protocol Perfusion with Akkermansia muciniphila or placebo
Growth protocol Healthy human study participants
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Ambion MessageAmp IIbiotin enhanced singleround amplification kit
 
Hybridization protocol Affymetrix GeneChip 3000 7G
Scan protocol Affymetrix GeneChip 3000 7G
Data processing R Bioconductor “oligo” and “pd.hugene.1.1.st.v1” packages
 
Submission date Aug 17, 2022
Last update date Aug 18, 2022
Contact name Robert-Jan Brummer
Organization name Örebro University
Department School of Medical Sciences
Street address Södra Grev Rosengatan 42 A
City Örebro
ZIP/Postal code 70362
Country Sweden
 
Platform ID GPL11532
Series (1)
GSE211506 Gene expression data from Akkermansia perfusion trial

Data table header descriptions
ID_REF
VALUE Bioconductor “oligo” RMA intensities, quantile normalised with “limma”

Data table
ID_REF VALUE
7892501 4.014972315
7892502 3.286135214
7892503 2.72490966
7892504 6.67920422
7892505 2.507175774
7892506 4.649188457
7892507 4.6169736
7892508 6.105481177
7892509 9.421409346
7892510 5.682784227
7892511 3.516004279
7892512 5.243948865
7892513 3.030129484
7892514 10.28368734
7892515 7.896943491
7892516 4.288968297
7892517 5.721704083
7892518 2.045268315
7892519 3.315419386
7892520 7.579968155

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM6474849_SUBJ04_Time3.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap