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Sample GSM6474848 Query DataSets for GSM6474848
Status Public on Aug 18, 2022
Title SUBJECT 04 Timepoint 2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics subject: 4
time: 2
treatment: Akkermansia
Treatment protocol Perfusion with Akkermansia muciniphila or placebo
Growth protocol Healthy human study participants
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Ambion MessageAmp IIbiotin enhanced singleround amplification kit
 
Hybridization protocol Affymetrix GeneChip 3000 7G
Scan protocol Affymetrix GeneChip 3000 7G
Data processing R Bioconductor “oligo” and “pd.hugene.1.1.st.v1” packages
 
Submission date Aug 17, 2022
Last update date Aug 18, 2022
Contact name Robert-Jan Brummer
Organization name Örebro University
Department School of Medical Sciences
Street address Södra Grev Rosengatan 42 A
City Örebro
ZIP/Postal code 70362
Country Sweden
 
Platform ID GPL11532
Series (1)
GSE211506 Gene expression data from Akkermansia perfusion trial

Data table header descriptions
ID_REF
VALUE Bioconductor “oligo” RMA intensities, quantile normalised with “limma”

Data table
ID_REF VALUE
7892501 3.635298711
7892502 3.576938807
7892503 3.178847091
7892504 6.646163631
7892505 2.313911392
7892506 3.660071654
7892507 4.874651163
7892508 6.201450614
7892509 9.041641909
7892510 5.392951825
7892511 3.30851687
7892512 5.592920247
7892513 2.482554432
7892514 9.820134841
7892515 7.620933998
7892516 3.291633154
7892517 5.454351292
7892518 2.712628376
7892519 3.400598448
7892520 8.225303479

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM6474848_SUBJ04_Time2.CEL.gz 4.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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