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Sample GSM6474842 Query DataSets for GSM6474842
Status Public on Aug 18, 2022
Title SUBJECT 02 Timepoint 2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics subject: 2
time: 2
treatment: Akkermansia
Treatment protocol Perfusion with Akkermansia muciniphila or placebo
Growth protocol Healthy human study participants
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Ambion MessageAmp IIbiotin enhanced singleround amplification kit
 
Hybridization protocol Affymetrix GeneChip 3000 7G
Scan protocol Affymetrix GeneChip 3000 7G
Data processing R Bioconductor “oligo” and “pd.hugene.1.1.st.v1” packages
 
Submission date Aug 17, 2022
Last update date Aug 18, 2022
Contact name Robert-Jan Brummer
Organization name Örebro University
Department School of Medical Sciences
Street address Södra Grev Rosengatan 42 A
City Örebro
ZIP/Postal code 70362
Country Sweden
 
Platform ID GPL11532
Series (1)
GSE211506 Gene expression data from Akkermansia perfusion trial

Data table header descriptions
ID_REF
VALUE Bioconductor “oligo” RMA intensities, quantile normalised with “limma”

Data table
ID_REF VALUE
7892501 3.50195892
7892502 3.671703626
7892503 2.491967857
7892504 7.970357458
7892505 2.694821212
7892506 4.655221606
7892507 4.497419423
7892508 6.566593613
7892509 8.121335885
7892510 5.284519013
7892511 3.937071541
7892512 5.042124861
7892513 2.60405441
7892514 10.04462202
7892515 9.281855373
7892516 3.534376375
7892517 5.873956416
7892518 1.866963844
7892519 3.33899242
7892520 9.667864771

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM6474842_SUBJ02_Time2.CEL.gz 4.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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