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Sample GSM6474840 Query DataSets for GSM6474840
Status Public on Aug 18, 2022
Title SUBJECT 01 Timepoint 3
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics subject: 1
time: 3
treatment: Akkermansia
Treatment protocol Perfusion with Akkermansia muciniphila or placebo
Growth protocol Healthy human study participants
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Ambion MessageAmp IIbiotin enhanced singleround amplification kit
 
Hybridization protocol Affymetrix GeneChip 3000 7G
Scan protocol Affymetrix GeneChip 3000 7G
Data processing R Bioconductor “oligo” and “pd.hugene.1.1.st.v1” packages
 
Submission date Aug 17, 2022
Last update date Aug 18, 2022
Contact name Robert-Jan Brummer
Organization name Örebro University
Department School of Medical Sciences
Street address Södra Grev Rosengatan 42 A
City Örebro
ZIP/Postal code 70362
Country Sweden
 
Platform ID GPL11532
Series (1)
GSE211506 Gene expression data from Akkermansia perfusion trial

Data table header descriptions
ID_REF
VALUE Bioconductor “oligo” RMA intensities, quantile normalised with “limma”

Data table
ID_REF VALUE
7892501 3.072770595
7892502 3.287580831
7892503 3.301866547
7892504 8.063293106
7892505 1.967507214
7892506 3.942886906
7892507 4.385393381
7892508 6.558289326
7892509 8.982996036
7892510 3.745813099
7892511 5.100840316
7892512 5.927355297
7892513 2.631268267
7892514 10.07095009
7892515 8.63773705
7892516 3.693862139
7892517 4.506039706
7892518 1.773803989
7892519 3.922572898
7892520 8.859547096

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM6474840_SUBJ01_Time3.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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