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Sample GSM6474839 Query DataSets for GSM6474839
Status Public on Aug 18, 2022
Title SUBJECT 01 Timepoint 2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics subject: 1
time: 2
treatment: Akkermansia
Treatment protocol Perfusion with Akkermansia muciniphila or placebo
Growth protocol Healthy human study participants
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Ambion MessageAmp IIbiotin enhanced singleround amplification kit
 
Hybridization protocol Affymetrix GeneChip 3000 7G
Scan protocol Affymetrix GeneChip 3000 7G
Data processing R Bioconductor “oligo” and “pd.hugene.1.1.st.v1” packages
 
Submission date Aug 17, 2022
Last update date Aug 18, 2022
Contact name Robert-Jan Brummer
Organization name Örebro University
Department School of Medical Sciences
Street address Södra Grev Rosengatan 42 A
City Örebro
ZIP/Postal code 70362
Country Sweden
 
Platform ID GPL11532
Series (1)
GSE211506 Gene expression data from Akkermansia perfusion trial

Data table header descriptions
ID_REF
VALUE Bioconductor “oligo” RMA intensities, quantile normalised with “limma”

Data table
ID_REF VALUE
7892501 3.894759083
7892502 3.262302925
7892503 1.77261122
7892504 7.677216794
7892505 2.124322874
7892506 4.278417676
7892507 5.367142162
7892508 5.564058904
7892509 7.287419906
7892510 5.427810315
7892511 3.387833163
7892512 5.126249643
7892513 2.720309291
7892514 9.605349474
7892515 7.828330791
7892516 2.538469314
7892517 4.385312462
7892518 2.08652302
7892519 3.803856728
7892520 8.364560382

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM6474839_SUBJ01_Time2.CEL.gz 4.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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