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Sample GSM645843 Query DataSets for GSM645843
Status Public on Dec 24, 2010
Title High-grade ovarian cancer cell line OVCAR-3
Sample type genomic
 
Source name OVCAR-3
Organism Homo sapiens
Characteristics cell line: OVCAR-3
Growth protocol Cell lines were grown according to standard conditions.
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted from ovarian cell lines using the Qiagen DNA Kit. DNA quality and quantity was assessed using a Nanodrop Spectrophotometer, PicoGreen and agarose gel electrophoresis.
Label biotin
Label protocol According to the Affimetrix Cytogenetics Copy Number assay protocol (Human SNP Nsp/Sty 6.0)
 
Hybridization protocol According to the Affimetrix Cytogenetics Copy Number assay protocol (Human SNP Nsp/Sty 6.0)
Scan protocol According to the Affimetrix Cytogenetics Copy Number assay protocol (Human SNP Nsp/Sty 6.0)
Description Human ovarian cell line
Data processing Affymetrix Genotyping Console using 67 HapMap files as a reference
CHP files for each cell line containg Log2Ratio with HapMap as reference
 
Submission date Dec 23, 2010
Last update date Dec 24, 2010
Contact name Jean-Philippe Paul Theurilllat
E-mail(s) jean-philippe.theurillat@cell.biol.ethz.ch
Phone 0041 44 633 76 58
Fax 0041 44 633 10 69
Organization name ETH Hönggerberg
Department Cell Biology
Lab Group Krek
Street address Schafmattstrasse 18
City Zurich
ZIP/Postal code 8093
Country Switzerland
 
Platform ID GPL6801
Series (1)
GSE26301 Affymetrix SNP array data for ovarian cancer cells OVCAR-3 and FU-OV-1

Data table header descriptions
ID_REF
VALUE CN STATE
CHROMOSOME
POSITION
LOG2 RATIO
SMOOTH SIGNAL
LOH
ALLELE DIFFERENCE

Data table
ID_REF VALUE CHROMOSOME POSITION LOG2 RATIO SMOOTH SIGNAL LOH ALLELE DIFFERENCE
CN_473963 2.000000 1 51586 -0.111858 1.431219 nan nan
CN_473964 2.000000 1 51659 -0.193295 1.431257 nan nan
CN_473965 2.000000 1 51674 -0.212223 1.431265 nan nan
CN_473981 2.000000 1 52771 -0.473741 1.431837 nan nan
CN_473982 2.000000 1 52788 -0.130344 1.431846 nan nan
CN_497981 2.000000 1 62627 -0.099176 1.437206 nan nan
CN_502615 2.000000 1 75787 -0.020687 1.445034 nan nan
CN_502613 2.000000 1 75849 -0.684130 1.445073 nan nan
CN_502614 2.000000 1 76175 -0.076046 1.445277 nan nan
CN_502616 2.000000 1 76192 -0.212250 1.445287 nan nan
CN_502843 2.000000 1 88453 0.249011 1.453304 nan nan
CN_466171 2.000000 1 218557 0.994238 2.435388 nan nan
CN_468414 2.000000 1 218926 -0.010116 2.435432 nan nan
CN_468412 2.000000 1 219009 -0.067208 2.435442 nan nan
CN_468413 2.000000 1 219024 0.260732 2.435444 nan nan
CN_470565 2.000000 1 219470 -0.158847 2.435498 nan nan
CN_468424 2.000000 1 225521 0.443774 2.436237 nan nan
CN_468425 2.000000 1 225579 0.223158 2.436244 nan nan
CN_460512 2.000000 1 346294 -0.859645 1.339836 nan nan
CN_460513 2.000000 1 346393 0.382457 1.339838 nan nan

Total number of rows: 1813441

Table truncated, full table size 114188 Kbytes.




Supplementary file Size Download File type/resource
GSM645843_Ovcar3.CEL.gz 28.9 Mb (ftp)(http) CEL
GSM645843_Ovcar3.CN5.CNCHP.gz 34.6 Mb (ftp)(http) CNCHP
Processed data included within Sample table
Processed data provided as supplementary file

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