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Sample GSM645842 Query DataSets for GSM645842
Status Public on Dec 24, 2010
Title High-grade ovarian cancer cell line FU-OV-1
Sample type genomic
 
Source name FU-OV-1
Organism Homo sapiens
Characteristics cell line: FU-OV-1
Growth protocol Cell lines were grown according to standard conditions.
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted from ovarian cell lines using the Qiagen DNA Kit. DNA quality and quantity was assessed using a Nanodrop Spectrophotometer, PicoGreen and agarose gel electrophoresis.
Label biotin
Label protocol According to the Affimetrix Cytogenetics Copy Number assay protocol (Human SNP Nsp/Sty 6.0)
 
Hybridization protocol According to the Affimetrix Cytogenetics Copy Number assay protocol (Human SNP Nsp/Sty 6.0)
Scan protocol According to the Affimetrix Cytogenetics Copy Number assay protocol (Human SNP Nsp/Sty 6.0)
Description Human ovarian cell line
Data processing Affymetrix Genotyping Console using 67 HapMap files as a reference
CHP files for each cell line containg Log2Ratio with HapMap as reference
 
Submission date Dec 23, 2010
Last update date Dec 24, 2010
Contact name Jean-Philippe Paul Theurilllat
E-mail(s) jean-philippe.theurillat@cell.biol.ethz.ch
Phone 0041 44 633 76 58
Fax 0041 44 633 10 69
Organization name ETH Hönggerberg
Department Cell Biology
Lab Group Krek
Street address Schafmattstrasse 18
City Zurich
ZIP/Postal code 8093
Country Switzerland
 
Platform ID GPL6801
Series (1)
GSE26301 Affymetrix SNP array data for ovarian cancer cells OVCAR-3 and FU-OV-1

Data table header descriptions
ID_REF
VALUE CN STATE
CHROMOSOME
POSITION
LOG2 RATIO
SMOOTH SIGNAL
LOH
ALLELE DIFFERENCE

Data table
ID_REF VALUE CHROMOSOME POSITION LOG2 RATIO SMOOTH SIGNAL LOH ALLELE DIFFERENCE
CN_473963 3.000000 1 51586 0.909861 3.371380 nan nan
CN_473964 3.000000 1 51659 0.178011 3.371505 nan nan
CN_473965 3.000000 1 51674 0.185221 3.371531 nan nan
CN_473981 3.000000 1 52771 0.079704 3.373409 nan nan
CN_473982 3.000000 1 52788 0.715097 3.373438 nan nan
CN_497981 3.000000 1 62627 0.116958 3.390553 nan nan
CN_502615 3.000000 1 75787 0.625747 3.414085 nan nan
CN_502613 3.000000 1 75849 0.110765 3.414197 nan nan
CN_502614 3.000000 1 76175 1.029659 3.414788 nan nan
CN_502616 3.000000 1 76192 0.672082 3.414819 nan nan
CN_502843 3.000000 1 88453 0.503319 3.437240 nan nan
CN_466171 3.000000 1 218557 1.157684 2.974018 nan nan
CN_468414 3.000000 1 218926 -0.249259 2.973749 nan nan
CN_468412 3.000000 1 219009 0.832752 2.973689 nan nan
CN_468413 3.000000 1 219024 0.148985 2.973678 nan nan
CN_470565 3.000000 1 219470 0.381491 2.973353 nan nan
CN_468424 3.000000 1 225521 0.203031 2.968937 nan nan
CN_468425 3.000000 1 225579 0.033829 2.968895 nan nan
CN_460512 3.000000 1 346294 0.575229 4.184020 nan nan
CN_460513 3.000000 1 346393 0.690288 4.184021 nan nan

Total number of rows: 1813441

Table truncated, full table size 114171 Kbytes.




Supplementary file Size Download File type/resource
GSM645842_FU-OV-1.CEL.gz 29.8 Mb (ftp)(http) CEL
GSM645842_FU-OV-1.CN5.CNCHP.gz 34.7 Mb (ftp)(http) CNCHP
Processed data included within Sample table
Processed data provided as supplementary file

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