|
| Status |
Public on Aug 01, 2022 |
| Title |
23833 primary tumour [SJ41-10] |
| Sample type |
SRA |
| |
|
| Source name |
primary tumour
|
| Organism |
Mus musculus |
| Characteristics |
tissue: primary tumour
cell line: 4T1
cell type: cancer
genotype: WT
treatment: none
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
phenol chloroform gDNA extraction
|
| |
|
| Library strategy |
OTHER |
| Library source |
genomic |
| Library selection |
other |
| Instrument model |
Illumina NextSeq 500 |
| |
|
| Description |
target barcode amplified gDNA
|
| Data processing |
Barcode counting using algorithm provided with barcode library (https://www.addgene.org/pooled-library/clontracer/)
Assembly: mm10 (GRCm38.p4)
|
| |
|
| Submission date |
Jul 29, 2022 |
| Last update date |
Aug 01, 2022 |
| Contact name |
Alexander Swarbrick |
| E-mail(s) |
a.swarbrick@garvan.org.au
|
| Organization name |
Garvan Institute of Medical Research
|
| Department |
Cancer Ecosystems Program
|
| Lab |
Cancer Tumour Progression
|
| Street address |
384 Victoria St
|
| City |
Darlinghurst |
| State/province |
NSW |
| ZIP/Postal code |
2010 |
| Country |
Australia |
| |
|
| Platform ID |
GPL19057 |
| Series (2) |
| GSE210051 |
DNA barcoding reveals ongoing immunoediting of clonal cancer populations during metastatic progression and in response to immunotherapy [DNA barcodes: IT_and_cont_4T1_BC250000] |
| GSE210057 |
DNA barcoding reveals ongoing immunoediting of clonal cancer populations during metastatic progression and in response to immunotherapy |
|
| Relations |
| BioSample |
SAMN30050483 |
| SRA |
SRX16730944 |
