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Sample GSM639885 Query DataSets for GSM639885
Status Public on Dec 15, 2010
Title Suprabasal epidermal cells, Sample 2 replicate
Sample type RNA
Source name Human epidermis from brest reduction
Organism Homo sapiens
Characteristics cell type: Suprabasal epidermal cells
donor: 2
Extracted molecule total RNA
Extraction protocol Standard Affymetrix protocol
Label Biotin
Label protocol Standard Affymetrix protocol
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Data processing MAS 5.0
Submission date Dec 14, 2010
Last update date Dec 15, 2010
Contact name Miroslav Blumenberg
Phone 212 263-5924
Organization name NYU School of Medicine
Department Dermatology
Lab Blumenberg
Street address 455 First Ave #874
City New York
State/province NY
ZIP/Postal code 10016
Country USA
Platform ID GPL571
Series (1)
GSE26059 Epidermal differentiation: basal vs. suprabasal keratinocytes

Data table header descriptions
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)

Data table
AFFX-BioB-5_at 233.032 P 0.000389797
AFFX-BioB-M_at 413.467 P 5.16732e-05
AFFX-BioB-3_at 248.112 P 0.00010954
AFFX-BioC-5_at 531.915 P 6.02111e-05
AFFX-BioC-3_at 512.109 P 4.42873e-05
AFFX-BioDn-5_at 697.876 P 4.42873e-05
AFFX-BioDn-3_at 3323.9 P 7.00668e-05
AFFX-CreX-5_at 7032.15 P 5.16732e-05
AFFX-CreX-3_at 7485.64 P 4.42873e-05
AFFX-DapX-5_at 1.6409 A 0.699394
AFFX-DapX-M_at 3.33767 A 0.51489
AFFX-DapX-3_at 1.10343 A 0.990663
AFFX-LysX-5_at 11.4612 M 0.0584438
AFFX-LysX-M_at 7.65948 A 0.559354
AFFX-LysX-3_at 0.652177 A 0.891041
AFFX-PheX-5_at 6.53474 A 0.52976
AFFX-PheX-M_at 0.502197 A 0.979978
AFFX-PheX-3_at 4.02778 A 0.52976
AFFX-ThrX-5_at 3.36025 A 0.559354
AFFX-ThrX-M_at 2.63263 A 0.712257

Total number of rows: 22277

Table truncated, full table size 670 Kbytes.

Supplementary file Size Download File type/resource
GSM639885_Alix_B4-_B1-_3_U133A2.0.CEL.gz 2.0 Mb (ftp)(http) CEL
GSM639885_Alix_B4-_B1-_3_U133A2.0.CHP.gz 441.3 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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