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Sample GSM639880 Query DataSets for GSM639880
Status Public on Dec 15, 2010
Title Basal epidermal cells, Sample 1
Sample type RNA
 
Source name Human epidermis from brest reduction
Organism Homo sapiens
Characteristics cell type: Basal epidermal cells
donor: 1
Extracted molecule total RNA
Extraction protocol Standard Affymetrix protocol
Label Biotin
Label protocol Standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Data processing MAS 5.0
 
Submission date Dec 14, 2010
Last update date Dec 15, 2010
Contact name Miroslav Blumenberg
E-mail(s) miroslav.blumenberg@nyumc.org
Phone 212 263-5924
Organization name NYU School of Medicine
Department Dermatology
Lab Blumenberg
Street address 455 First Ave #874
City New York
State/province NY
ZIP/Postal code 10016
Country USA
 
Platform ID GPL571
Series (1)
GSE26059 Epidermal differentiation: basal vs. suprabasal keratinocytes

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 160.389 P 0.0012475
AFFX-BioB-M_at 228.136 P 4.42873e-05
AFFX-BioB-3_at 106.694 P 9.4506e-05
AFFX-BioC-5_at 326.312 P 5.16732e-05
AFFX-BioC-3_at 316.279 P 6.02111e-05
AFFX-BioDn-5_at 357.426 P 4.42873e-05
AFFX-BioDn-3_at 1950.87 P 9.4506e-05
AFFX-CreX-5_at 4277.79 P 5.16732e-05
AFFX-CreX-3_at 4948.33 P 4.42873e-05
AFFX-DapX-5_at 2.23712 A 0.354453
AFFX-DapX-M_at 19.9321 A 0.455413
AFFX-DapX-3_at 2.76647 A 0.824672
AFFX-LysX-5_at 2.81041 A 0.544587
AFFX-LysX-M_at 15.912 A 0.686277
AFFX-LysX-3_at 6.32989 A 0.51489
AFFX-PheX-5_at 1.96367 A 0.860518
AFFX-PheX-M_at 2.90986 A 0.574038
AFFX-PheX-3_at 17.1083 A 0.39692
AFFX-ThrX-5_at 1.04579 A 0.960339
AFFX-ThrX-M_at 2.57515 A 0.737173

Total number of rows: 22277

Table truncated, full table size 665 Kbytes.




Supplementary file Size Download File type/resource
GSM639880_Alix_Gazel_2-19-04_B4+_4_U133A_2.0.CEL.gz 2.0 Mb (ftp)(http) CEL
GSM639880_Alix_Gazel_2-19-04_B4+_4_U133A_2.0.CHP.gz 442.4 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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