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Sample GSM63445 Query DataSets for GSM63445
Status Public on Sep 01, 2005
Title MM-048_2
Sample type RNA
 
Source name CD138+ plasma cells obtained from bone marrow of MM patient
Organism Homo sapiens
Characteristics for full details see Table 1, Appendix_A from Agnelli, et al., "Molecular classification of multiple myeloma: a distinct transcriptional profile characterizes patients expressing CCND1 and negative for 14q32 translocations", J Clin Onc, in press
Extracted molecule total RNA
Label biotin-labeled UTP and CTP
 
Description gene expression profiles of purified plasma cells (PCs) obtained from MM-004 patient.
Keywords = Gene expression profiling
Keywords = Multiple myeloma
Keywords = TC classification
Keywords = Cyclin D
Keywords = IGH translocation
Data processing After scanning, the CEL files were processed using standard Robust Multi-Array average (RMA) procedure to generate gene expression intensity values. Detection calls were calculated using the default parameters of Affymetrix MAS 5.0 software package.
 
Submission date Jul 11, 2005
Last update date Jul 11, 2005
Contact name Luca Agnelli
E-mail(s) luca.agnelli@istitutotumori.mi.it, luca.agnelli@gmail.com
Phone +390223903581
Organization name IRCCS Istituto Nazionale dei Tumori
Department Department of Advanced Diagnostics
Street address Venezian 1
City MILAN
ZIP/Postal code 20133
Country Italy
 
Platform ID GPL96
Series (1)
GSE2912 Molecular classification of multiple myeloma

Data table header descriptions
ID_REF Affymetrix probes number ID
VALUE RMA normalized intensity value
ABS_CALL The call in the absolute analysis that indicates if the transcript was present (P), absent (A) or marginal (M)

Data table
ID_REF VALUE ABS_CALL
1007_s_at 276.2622903 P
1053_at 72.18789254 P
117_at 132.7733715 P
121_at 608.9307698 P
1255_g_at 20.99697213 A
1294_at 251.3947412 P
1316_at 46.62483005 P
1320_at 29.84558003 A
1405_i_at 38.39916716 A
1431_at 17.75408652 P
1438_at 141.4535031 A
1487_at 340.4311942 P
1494_f_at 164.665971 A
1598_g_at 991.4163317 P
160020_at 246.9272143 P
1729_at 261.8510669 P
177_at 54.46110486 A
1773_at 105.5126872 P
179_at 549.5262357 M
1861_at 174.4784338 P

Total number of rows: 22283

Table truncated, full table size 540 Kbytes.




Supplementary data files not provided

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