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Sample GSM629848 Query DataSets for GSM629848
Status Public on Jul 13, 2012
Title Glioblastoma_gbm-0609
Sample type RNA
 
Source name Human glioblastoma
Organism Homo sapiens
Characteristics patient population: Chinese
tissue: brain
disease state: primary glioblastoma multiform (brain tumor)
tumor grade: WHO grade 4
patient age: 45
patient gender: female
Extracted molecule total RNA
Extraction protocol Total RNA was extracted with mirVana miRNA Isolation kit (Ambion, Austin, TX) according to the manufacturer’s protocol. Quality control was performed with NanoDrop ND-1000 spectrophotometer (NanoDrop Technologies, Houston, TX).
Label Cy3
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol with Illumina BeadReader
Data processing The data were background subtracted and normalized using quantile normalization with Illumina BeadStudio software v3.1
 
Submission date Nov 28, 2010
Last update date Jul 13, 2012
Contact name Wei Zhang
E-mail(s) zhangwei_vincent@yahoo.com.cn
Organization name Beijing Tiantan Hospital, Capital Medical University
Department Glioma Center, Department of Neurosurgery
Street address No.6 Tiantan Xili, Dongcheng District
City Beijing
ZIP/Postal code 100050
Country China
 
Platform ID GPL8179
Series (2)
GSE25631 Genome-wide analysis of microRNA expression in surgical specimens of primary glioblastoma multiform
GSE25632 Surgical specimens of primary glioblastoma multiform: mRNA and miRNA profiling

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_3167304 -13.16923 0.6352406
ILMN_3168038 91.27395 6.76E-05
ILMN_3167890 13128.58 3.68E-38
ILMN_3167526 -12.47605 0.62481
ILMN_3167209 -6.941957 0.5388644
ILMN_3168219 96.42168 2.89E-05
ILMN_3167464 127.2058 7.66E-08
ILMN_3167213 -20.43059 0.7373423
ILMN_3167057 857.9899 3.68E-38
ILMN_3168313 -16.90787 0.6896195
ILMN_3166972 -0.1919571 0.4319336
ILMN_3168149 107.3989 4.11E-06
ILMN_3168527 -4.54423 0.5008018
ILMN_3167562 9.114861 0.293777
ILMN_3168099 408.183 3.68E-38
ILMN_3168017 360.399 3.68E-38
ILMN_3167545 -9.930593 0.585774
ILMN_3167951 64.62623 0.002936166
ILMN_3167172 1.273952 0.4090932
ILMN_3167994 21.23986 0.1525318

Total number of rows: 1145

Table truncated, full table size 35 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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