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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Dec 05, 2023 |
| Title |
S10_S10 |
| Sample type |
SRA |
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| Source name |
Neuro 2a cells – CUT&RUN
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| Organism |
Mus musculus |
| Characteristics |
tissue: Neuroblastoma
cell type: CD49b-neg
strain: A/J
antibody: H3K4me1
cell line: Neuro 2a
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| Extracted molecule |
genomic DNA |
| Extraction protocol |
Qiagen RNEasy kit (RNAseq) or Cell Signaling CUT&RUN kit (CUT&RUN)
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| Library strategy |
OTHER |
| Library source |
genomic |
| Library selection |
other |
| Instrument model |
Illumina NovaSeq 6000 |
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| Data processing |
Sequencing performed using Illumina NovaSeq platform
Assembly: mm10, GRCh38
Library strategy: CUT&RUN
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| Submission date |
Jul 05, 2022 |
| Last update date |
Dec 05, 2023 |
| Contact name |
Allan M Goldstein |
| E-mail(s) |
amgoldstein@partners.org
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| Phone |
617-726-0270
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| Organization name |
Massachusetts General Hospital
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| Department |
Pediatric Surgery
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| Lab |
Goldstein Lab
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| Street address |
185 Cambridge St
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| City |
Boston |
| State/province |
MA |
| ZIP/Postal code |
02114 |
| Country |
USA |
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| Platform ID |
GPL24247 |
| Series (1) |
| GSE207516 |
Transcriptonal and epigenetic profiling of neuroblastoma cells based on CD49b expression |
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| Relations |
| BioSample |
SAMN29509744 |
| SRA |
SRX16033175 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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