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| Status |
Public on Dec 05, 2023 |
| Title |
S3_SH_low |
| Sample type |
SRA |
| |
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| Source name |
SH-SY5Y cells – RNAseq
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| Organism |
Homo sapiens |
| Characteristics |
tissue: Neuroblastoma
cell type: CD49b-neg
strain: n/a
cell line: SH-SY5Y
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| Extracted molecule |
total RNA |
| Extraction protocol |
Qiagen RNEasy kit (RNAseq) or Cell Signaling CUT&RUN kit (CUT&RUN)
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
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| Data processing |
Sequencing performed using Illumina NovaSeq platform
Assembly: mm10, GRCh38
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| Submission date |
Jul 05, 2022 |
| Last update date |
Dec 05, 2023 |
| Contact name |
Allan M Goldstein |
| E-mail(s) |
amgoldstein@partners.org
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| Phone |
617-726-0270
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| Organization name |
Massachusetts General Hospital
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| Department |
Pediatric Surgery
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| Lab |
Goldstein Lab
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| Street address |
185 Cambridge St
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| City |
Boston |
| State/province |
MA |
| ZIP/Postal code |
02114 |
| Country |
USA |
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| Platform ID |
GPL24676 |
| Series (1) |
| GSE207516 |
Transcriptonal and epigenetic profiling of neuroblastoma cells based on CD49b expression |
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| Relations |
| BioSample |
SAMN29509763 |
| SRA |
SRX16033156 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM6293903_S3_SH_low_S3.Rmatrix.txt.gz |
157.6 Kb |
(ftp)(http) |
TXT |
| GSM6293903_S3_SH_low_S3.featureCounts.txt.gz |
3.8 Mb |
(ftp)(http) |
TXT |
| GSM6293903_S3_SH_low_S3.featureCounts.txt.summary.txt.gz |
295 b |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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