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| Status |
Public on Jan 01, 2024 |
| Title |
WTKD, 12 |
| Sample type |
SRA |
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| Source name |
cerebellum
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| Organism |
Mus musculus |
| Characteristics |
tissue: cerebellum
Sex: M
strain: C57BL6
genotype: WT
treatment: KD
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| Extracted molecule |
total RNA |
| Extraction protocol |
RNA extraction with trizol-chloroform
Total RNA, rRNA depleted
libraries were prepared using the DNBseq protocol from BGI.
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
BGISEQ-500 |
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| Data processing |
Python
Paired-end reads from 44 RNA-Seq samples were aligned to mm9 using bowtie2
Differential expression analysis was performed using a Salmon → tximeta → DESeq2
GSEA was performed directly on DESeq2 normalized counts
Assembly: mm9
Supplementary files format and content: DESeq2 normalized counts
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| Submission date |
Jul 01, 2022 |
| Last update date |
Jan 01, 2024 |
| Contact name |
Morten Scheibye-Knudsen |
| E-mail(s) |
mscheibye@sund.ku.dk
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| Phone |
+4542507060
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| Organization name |
University of Copenhagen
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| Street address |
Blegdamsvej 3B
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| City |
Copenhagen N |
| State/province |
Copenhagen N |
| ZIP/Postal code |
2200 |
| Country |
Denmark |
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| Platform ID |
GPL23479 |
| Series (1) |
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| Relations |
| BioSample |
SAMN29473264 |
| SRA |
SRX15967385 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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