|
Status |
Public on Jan 01, 2023 |
Title |
714_S27 |
Sample type |
SRA |
|
|
Source name |
hearts from female mice
|
Organism |
Mus musculus |
Characteristics |
tissue: hearts from female mice Sex: female treatment: chow diet for 8 weeks followed by high-fat/high-sucrose diet 8 weeks
|
Growth protocol |
16 week mice maintained on 12 hr light dark cycle fed chow diet for 8 weeks followed by high-fat/high-sucrose diet for 8 weeks. PMID: 23312289
|
Extracted molecule |
total RNA |
Extraction protocol |
Qiagen miRNAeasy kit QIAseq miRNA Library Kit
|
|
|
Library strategy |
miRNA-Seq |
Library source |
transcriptomic |
Library selection |
size fractionation |
Instrument model |
Illumina HiSeq 3000 |
|
|
Data processing |
Data mapping using hisat2 (version 2.0.6) with paramters:--very-sensitive --score-min=C,-15,0 --seed 19 Read count extraction using htseq-count version 0.13.5 Assembly: mm10 Supplementary files format and content: csv text files include raw counts values for each sample
|
|
|
Submission date |
Jun 28, 2022 |
Last update date |
Jan 01, 2023 |
Contact name |
Karolina Elzbieta Kaczor Urbanowcz |
E-mail(s) |
kkaczor@g.ucla.edu
|
Phone |
4245357560
|
Organization name |
UCLA
|
Street address |
10833 Le Conte Avenue
|
City |
Los Angeles |
State/province |
CA |
ZIP/Postal code |
90024 |
Country |
USA |
|
|
Platform ID |
GPL21493 |
Series (1) |
GSE207142 |
Small RNA sequencing of hearts from female mice on high fat diet, from 85 strains |
|
Relations |
BioSample |
SAMN29406221 |
SRA |
SRX15935080 |