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Sample GSM6280388 Query DataSets for GSM6280388
Status Public on Jan 01, 2023
Title 714_S27
Sample type SRA
 
Source name hearts from female mice
Organism Mus musculus
Characteristics tissue: hearts from female mice
Sex: female
treatment: chow diet for 8 weeks followed by high-fat/high-sucrose diet 8 weeks
Growth protocol 16 week mice maintained on 12 hr light dark cycle fed chow diet for 8 weeks followed by high-fat/high-sucrose diet for 8 weeks. PMID: 23312289
Extracted molecule total RNA
Extraction protocol Qiagen miRNAeasy kit
QIAseq miRNA Library Kit
 
Library strategy miRNA-Seq
Library source transcriptomic
Library selection size fractionation
Instrument model Illumina HiSeq 3000
 
Data processing Data mapping using hisat2 (version 2.0.6) with paramters:--very-sensitive --score-min=C,-15,0 --seed 19
Read count extraction using htseq-count version 0.13.5
Assembly: mm10
Supplementary files format and content: csv text files include raw counts values for each sample
 
Submission date Jun 28, 2022
Last update date Jan 01, 2023
Contact name Karolina Elzbieta Kaczor Urbanowcz
E-mail(s) kkaczor@g.ucla.edu
Phone 4245357560
Organization name UCLA
Street address 10833 Le Conte Avenue
City Los Angeles
State/province CA
ZIP/Postal code 90024
Country USA
 
Platform ID GPL21493
Series (1)
GSE207142 Small RNA sequencing of hearts from female mice on high fat diet, from 85 strains
Relations
BioSample SAMN29406221
SRA SRX15935080

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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