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Sample GSM626344 Query DataSets for GSM626344
Status Public on Nov 30, 2011
Title Feproexpress AP 05
Sample type RNA
Source name Liver
Organism Sus scrofa
Characteristics breed: German Landrace
tissue: liver
ontogenetic stage: 94 dpc
gestation diet: offspring of German Landrace gilts fed a gestational adequate protein diet
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using TRI Reagent (Sigma, Taufkirchen, Germany) according to the manufacturer’s protocol. After DNaseI treatment the RNA was cleaned up using the RNeasy Kit (Qiagen, Hilden, Germany).
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 0.5 ug total RNA (Expression Analysis Technical Manual, 2009, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 42C on Affymetrix GeneChip Porcine Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol Scanning using the GeneChip scanner 3000 were performed according to Affymetrix protocols
Description Gene expression data from liver sample of offspring
Data processing Data were analysed with Affymetrix GCOS 1.1.1 software using global scaling to a target signal of 500 and BioConductor.
Submission date Nov 18, 2010
Last update date Nov 30, 2011
Contact name Klaus Wimmers
Phone 0049 3820868700
Organization name Leibniz Institute for Farm Animal Biology (FBN)
Street address Wilhelm-Stahl-Allee 2
City Dummerstorf
ZIP/Postal code 18196
Country Germany
Platform ID GPL3533
Series (2)
GSE25482 Fetal programming of hepatic transcriptome in response to gestational dietary protein levels in the pig (AP data set)
GSE25484 Fetal programming of hepatic transcriptome in response to gestational dietary protein levels in the pig

Data table header descriptions
VALUE MAS5.0 signal intensity

Data table
AFFX-BioB-5_at 850.1286 P 0.000581214
AFFX-BioB-M_at 976.3575 P 4.43E-05
AFFX-BioB-3_at 711.8636 P 4.43E-05
AFFX-BioC-5_at 2276.28 P 5.17E-05
AFFX-BioC-3_at 3250.225 P 4.43E-05
AFFX-BioDn-5_at 5790.966 P 4.43E-05
AFFX-BioDn-3_at 12380.02 P 0.000224668
AFFX-CreX-5_at 41925.87 P 5.17E-05
AFFX-CreX-3_at 43516.57 P 4.43E-05
AFFX-DapX-5_at 3701.777 P 4.43E-05
AFFX-DapX-M_at 5540.788 P 9.45E-05
AFFX-DapX-3_at 6727.768 P 4.43E-05
AFFX-LysX-5_at 363.4712 P 5.17E-05
AFFX-LysX-M_at 502.4718 P 0.002022599
AFFX-LysX-3_at 671.1677 P 4.43E-05
AFFX-PheX-5_at 524.3326 P 4.43E-05
AFFX-PheX-M_at 626.0263 P 0.000169227
AFFX-PheX-3_at 493.8644 P 0.000662269
AFFX-ThrX-5_at 931.9387 P 0.00010954
AFFX-ThrX-M_at 1043.29 P 4.43E-05

Total number of rows: 24123

Table truncated, full table size 913 Kbytes.

Supplementary file Size Download File type/resource
GSM626344.CEL.gz 1.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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