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Sample GSM6254931 Query DataSets for GSM6254931
Status Public on Jun 23, 2022
Title larva_S1
Sample type SRA
 
Source name whole body
Organism Drosophila melanogaster
Characteristics tissue: whole body
developmental stage: third-instar larve
treatment: wild type
Extracted molecule total RNA
Extraction protocol Total RNA extraction using TRIzol method
RNA-library was prepared for sequencing using standard BGISEQ-500 protocol
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model BGISEQ-500
 
Description Drosophila melanogaster, sensitive strain, third-instar larve,rep1
Data processing Quality control was done by the FastQC (version 0.11.9)
Then the high-quality reads were mapped to the reference genome by STAR
The output files of STAR then were imported to RSEM (version 1.3.3)
The edgeR (version 3.12) package from Bioconductor was used to identify different expression genes (DEGs) for the sensitive and resistance strains
Assembly: dm6
Supplementary files format and content: csv/FPKM value for each sample
Supplementary files format and content: N/A
 
Submission date Jun 20, 2022
Last update date Jun 23, 2022
Contact name Ruiyan Hou
E-mail(s) ruiyan@connect.hku.hk
Organization name Institute of Zoology, Chinese Academy of Sciences
Department State Key Laboratory of Integrated Management of Pest Insects and Rodents
Lab Laboratory of Molecular Toxicology
Street address Datun Road
City Beijin
State/province Beijin
ZIP/Postal code 100101
Country China
 
Platform ID GPL26560
Series (1)
GSE206463 IRdb: an insect resistance database
Relations
BioSample SAMN29208044
SRA SRX15798461

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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