|
Status |
Public on Jun 23, 2022 |
Title |
larva_S1 |
Sample type |
SRA |
|
|
Source name |
whole body
|
Organism |
Drosophila melanogaster |
Characteristics |
tissue: whole body developmental stage: third-instar larve treatment: wild type
|
Extracted molecule |
total RNA |
Extraction protocol |
Total RNA extraction using TRIzol method RNA-library was prepared for sequencing using standard BGISEQ-500 protocol
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
BGISEQ-500 |
|
|
Description |
Drosophila melanogaster, sensitive strain, third-instar larve,rep1
|
Data processing |
Quality control was done by the FastQC (version 0.11.9) Then the high-quality reads were mapped to the reference genome by STAR The output files of STAR then were imported to RSEM (version 1.3.3) The edgeR (version 3.12) package from Bioconductor was used to identify different expression genes (DEGs) for the sensitive and resistance strains Assembly: dm6 Supplementary files format and content: csv/FPKM value for each sample Supplementary files format and content: N/A
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|
|
Submission date |
Jun 20, 2022 |
Last update date |
Jun 23, 2022 |
Contact name |
Ruiyan Hou |
E-mail(s) |
ruiyan@connect.hku.hk
|
Organization name |
Institute of Zoology, Chinese Academy of Sciences
|
Department |
State Key Laboratory of Integrated Management of Pest Insects and Rodents
|
Lab |
Laboratory of Molecular Toxicology
|
Street address |
Datun Road
|
City |
Beijin |
State/province |
Beijin |
ZIP/Postal code |
100101 |
Country |
China |
|
|
Platform ID |
GPL26560 |
Series (1) |
GSE206463 |
IRdb: an insect resistance database |
|
Relations |
BioSample |
SAMN29208044 |
SRA |
SRX15798461 |