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Sample GSM6166433 Query DataSets for GSM6166433
Status Public on Oct 31, 2023
Title Brd9_KO_03
Sample type SRA
 
Source name Lineage- bone marrow cells in femora and tibiae
Organism Mus musculus
Characteristics strain: C57BL/6
genotype: CD45.2(+) Mx1-Cre Brd9fl/fl
timing of preparation: Eight weeks after pIpC injection
Treatment protocol Four weeks after BMT, the recipient mice received 20 mg/kg pIpC injection every other day for a total of 3 doses.
Extracted molecule total RNA
Extraction protocol RNA was extracted using RNeasy columns (Qiagen) per manufacturer’s instructions.
RNA was poly(A)-selected, and unstranded Illumina libraries were prepared with the standard TruSeq protocol
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NovaSeq 6000
 
Data processing Raw FASTQs were processed using nf-core/rnaseq (3.0).
Assembly: mm10
Supplementary files format and content: txt
 
Submission date May 18, 2022
Last update date Oct 31, 2023
Contact name Masaki Nomura
E-mail(s) masaki.nomura.fbri@gmail.com
Organization name Foundation for Biomedical Research and Innovation at Kobe
Street address 6-3-7 Minatojima Minamimachi, Chuo Ward
City Kobe
State/province Hyogo
ZIP/Postal code 650-0047
Country Japan
 
Platform ID GPL24247
Series (2)
GSE203316 BRD9 determines the cell fate of hematopoietic stem cells by regulating chromatin state [bulk RNA-Seq I]
GSE203322 BRD9 determines the cell fate of hematopoietic stem cells by regulating chromatin state
Relations
BioSample SAMN28534445
SRA SRX15336991

Supplementary file Size Download File type/resource
GSM6166433_Brd9_KO_R3.genes.results.gz 456.5 Kb (ftp)(http) RESULTS
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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