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Sample GSM605915 Query DataSets for GSM605915
Status Public on Oct 08, 2010
Title Hs578t
Sample type RNA
Source name Cultured cell line
Organism Homo sapiens
Characteristics cell type: breast cancer cell
cell line: Hs578t
Treatment protocol No treatment
Growth protocol Subconfuent breast cancer cell lines
Extracted molecule total RNA
Extraction protocol RNeasy mini kit (Qiagen)
Label biotin
Label protocol Biotinylated cRNA were prepared using Ambion MessageAmp Premier labeling kit.
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human U133A plus 2.0 arrays. Affymetrix GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Affymetrix Scanner 3000 7G.
Description Gene expression data from breast cancer cell lines
Data processing The data were analyzed with RMA (Robust Multichip Average) using Bioconductor
Submission date Oct 07, 2010
Last update date Oct 07, 2010
Contact name Igor Shats
Organization name Duke University
Street address 101 Science Drive
City Durham
State/province NC
ZIP/Postal code 27710
Country USA
Platform ID GPL571
Series (2)
GSE24578 Basal gene expression of breast cancer cell lines
GSE24717 Using a Stem Cell-Based Signature to Guide Therapeutic Selection in Cancer

Data table header descriptions

Data table
1007_s_at 8.774331704
1053_at 9.212524909
117_at 5.801606173
121_at 8.156970619
1255_g_at 3.374343355
1294_at 6.744475301
1316_at 6.271529779
1320_at 5.577054371
1405_i_at 4.093870209
1431_at 4.322471601
1438_at 5.89769772
1487_at 8.560237597
1494_f_at 6.222970443
1598_g_at 10.91469702
160020_at 9.68609157
1729_at 8.378326422
177_at 4.968804186
1773_at 6.958320224
179_at 8.644110475
1861_at 8.353572745

Total number of rows: 22277

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM605915.CEL.gz 2.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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