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Sample GSM605914 Query DataSets for GSM605914
Status Public on Oct 08, 2010
Title MDA-MB-361
Sample type RNA
Source name Cultured cell line
Organism Homo sapiens
Characteristics cell type: breast cancer cell
cell line: MDA-MB-361
Treatment protocol No treatment
Growth protocol Subconfuent breast cancer cell lines
Extracted molecule total RNA
Extraction protocol RNeasy mini kit (Qiagen)
Label biotin
Label protocol Biotinylated cRNA were prepared using Ambion MessageAmp Premier labeling kit.
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human U133A plus 2.0 arrays. Affymetrix GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Affymetrix Scanner 3000 7G.
Description Gene expression data from breast cancer cell lines
Data processing The data were analyzed with RMA (Robust Multichip Average) using Bioconductor
Submission date Oct 07, 2010
Last update date Oct 07, 2010
Contact name Igor Shats
Organization name Duke University
Street address 101 Science Drive
City Durham
State/province NC
ZIP/Postal code 27710
Country USA
Platform ID GPL571
Series (2)
GSE24578 Basal gene expression of breast cancer cell lines
GSE24717 Using a Stem Cell-Based Signature to Guide Therapeutic Selection in Cancer

Data table header descriptions

Data table
1007_s_at 11.98822536
1053_at 9.801740346
117_at 5.573824071
121_at 8.14017295
1255_g_at 3.342280097
1294_at 5.433168034
1316_at 6.044976921
1320_at 5.10657142
1405_i_at 6.567777259
1431_at 4.038594586
1438_at 7.487818963
1487_at 8.304087495
1494_f_at 6.318633112
1598_g_at 8.466443935
160020_at 7.099792431
1729_at 9.354780483
177_at 4.808249342
1773_at 6.570487568
179_at 8.847475022
1861_at 8.851429775

Total number of rows: 22277

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM605914.CEL.gz 2.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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