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Sample GSM605689 Query DataSets for GSM605689
Status Public on Oct 08, 2010
Title PrEC
Sample type genomic
Source name PrEC cells
Organism Homo sapiens
Characteristics cell type: cell line
cell line: PrEC cells
Growth protocol 37 deg C with 5% CO2
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted using the Puregene extraction kit (Gentra Systems) according to the manufacturer's protocol.
Label biotin
Label protocol Affymetrix standard procedure
Hybridization protocol Affymetrix standard procedure
Scan protocol Affymetrix standard procedure
Data processing Data were processed through the R/aroma.affymetrix package using the CRMA algorithm (See
Submission date Oct 07, 2010
Last update date Oct 08, 2010
Contact name Mark Robinson
Organization name University of Zuerich
Department Institute of Molecular Life Sciences
Street address Winterthurerstrasse 190
City Zuerich
ZIP/Postal code 8057
Country Switzerland
Platform ID GPL6801
Series (1)
GSE24546 Evaluation of affinity-based genome-wide DNA methylation data: effects of CpG density, amplification bias and copy number variation

Data table header descriptions
VALUE CRMA normalized signal intensity

Data table
SNP_A-2131660 2.45626787111471
SNP_A-1967418 1.38285626912750
SNP_A-1969580 2.44821417929703
SNP_A-4263484 2.12499666614024
SNP_A-1978185 3.55325631756116
SNP_A-4264431 3.42531136785989
SNP_A-1980898 1.94295523627023
SNP_A-1983139 2.34040748777851
SNP_A-4265735 1.48431875252348
SNP_A-1995832 1.6930269222752
SNP_A-1995893 2.24033202494649
SNP_A-1997689 2.48539345389916
SNP_A-1997709 1.62945222942848
SNP_A-1997896 2.58158644289701
SNP_A-1997922 1.66295316685682
SNP_A-2000230 1.59842955793608
SNP_A-2000332 2.02850003515722
SNP_A-2000337 1.68444906956829
SNP_A-2000342 2.15330711758740
SNP_A-4268172 2.50962010797328

Total number of rows: 1874988

Table truncated, full table size 53330 Kbytes.

Supplementary file Size Download File type/resource
GSM605689.CEL.gz 27.8 Mb (ftp)(http) CEL
GSM605689.txt.gz 28.8 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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