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Sample GSM605688 Query DataSets for GSM605688
Status Public on Oct 08, 2010
Title LNCaP
Sample type genomic
Source name LNCaP cells
Organism Homo sapiens
Characteristics cell type: cell line
cell line: LNCaP cells
Growth protocol 37 deg C with 5% CO2
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted using the Puregene extraction kit (Gentra Systems) according to the manufacturer's protocol.
Label biotin
Label protocol Affymetrix standard procedure
Hybridization protocol Affymetrix standard procedure
Scan protocol Affymetrix standard procedure
Data processing Data were processed through the R/aroma.affymetrix package using the CRMA algorithm (See
Submission date Oct 07, 2010
Last update date Oct 08, 2010
Contact name Mark Robinson
Organization name University of Zuerich
Department Institute of Molecular Life Sciences
Street address Winterthurerstrasse 190
City Zuerich
ZIP/Postal code 8057
Country Switzerland
Platform ID GPL6801
Series (1)
GSE24546 Evaluation of affinity-based genome-wide DNA methylation data: effects of CpG density, amplification bias and copy number variation

Data table header descriptions
VALUE CRMA normalized signal intensity

Data table
SNP_A-2131660 3.26696530406694
SNP_A-1967418 2.01407553571506
SNP_A-1969580 3.0721629743082
SNP_A-4263484 2.32574896470544
SNP_A-1978185 1.96241463366502
SNP_A-4264431 2.61054544515984
SNP_A-1980898 2.54023623390174
SNP_A-1983139 2.55161896451995
SNP_A-4265735 2.21489703295590
SNP_A-1995832 2.51700761286997
SNP_A-1995893 2.87680214943208
SNP_A-1997689 2.94063245630516
SNP_A-1997709 2.67700349193045
SNP_A-1997896 2.36685316985709
SNP_A-1997922 1.83353728673978
SNP_A-2000230 2.06165607041114
SNP_A-2000332 2.54922595637151
SNP_A-2000337 2.29745087171230
SNP_A-2000342 2.27268573813833
SNP_A-4268172 3.11687642579433

Total number of rows: 1874988

Table truncated, full table size 53343 Kbytes.

Supplementary file Size Download File type/resource
GSM605688.CEL.gz 27.0 Mb (ftp)(http) CEL
GSM605688.txt.gz 28.8 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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