|
| Status |
Public on Oct 08, 2010 |
| Title |
LNCaP |
| Sample type |
genomic |
| |
|
| Source name |
LNCaP cells
|
| Organism |
Homo sapiens |
| Characteristics |
cell type: cell line
cell line: LNCaP cells
|
| Growth protocol |
37 deg C with 5% CO2
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA was extracted using the Puregene extraction kit (Gentra Systems) according to the manufacturer's protocol.
|
| Label |
biotin
|
| Label protocol |
Affymetrix standard procedure
|
| |
|
| Hybridization protocol |
Affymetrix standard procedure
|
| Scan protocol |
Affymetrix standard procedure
|
| Data processing |
Data were processed through the R/aroma.affymetrix package using the CRMA algorithm (See http://aroma-project.org/vignettes/CRMAv2).
|
| |
|
| Submission date |
Oct 07, 2010 |
| Last update date |
Oct 08, 2010 |
| Contact name |
Mark Robinson |
| E-mail(s) |
mark.robinson@imls.uzh.ch
|
| Organization name |
University of Zuerich
|
| Department |
Institute of Molecular Life Sciences
|
| Street address |
Winterthurerstrasse 190
|
| City |
Zuerich |
| ZIP/Postal code |
8057 |
| Country |
Switzerland |
| |
|
| Platform ID |
GPL6801 |
| Series (1) |
| GSE24546 |
Evaluation of affinity-based genome-wide DNA methylation data: effects of CpG density, amplification bias and copy number variation |
|
