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Sample GSM605626 Query DataSets for GSM605626
Status Public on Oct 08, 2010
Title Gingeras_prostate_cell
Sample type SRA
 
Source name prostate
Organism Homo sapiens
Characteristics lab: CSHL
lab description: Gingeras - Cold Spring Harbor Laboratory
datatype: RnaSeq
datatype description: Sequencing analysis of RNA expression
cell: prostate
cell organism: human
cell description: prostate tissue purchased for CSHL project
cell lineage: endoderm
localization: cell
localization description: Whole cell
protocol: TAP-Only
protocol description: This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned.
rnaextract: shortTotal
rnaextract description: Rna shorter than 200 nt that has not been seperated based on Poly Adenalyation
biorep: gen0161WC
labexpid: crg-61
labversion: Produced by Hannon Lab
Biomaterial provider ATCC
Growth protocol Prostate_Gingeras_protocol.pdf
Extracted molecule total RNA
Extraction protocol hg18: For extraction protocol details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg18&g=wgEncodeCshlShortRnaSeq
hg19: For extraction protocol details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeCshlShortRnaSeq
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina Genome Analyzer
 
Data processing hg18: For data processing details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg18&g=wgEncodeCshlShortRnaSeq
hg19: For data processing details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeCshlShortRnaSeq
 
Submission date Oct 06, 2010
Last update date Aug 26, 2014
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (1)
GSE24565 Small RNA-seq from ENCODE/Cold Spring Harbor Lab
Relations
BioSample SAMN02195960
Named Annotation GSM605626_hg19_wgEncodeCshlShortRnaSeqProstateCellTotalMinusRaw.bigWig
Named Annotation GSM605626_hg19_wgEncodeCshlShortRnaSeqProstateCellTotalPlusRaw.bigWig

Supplementary file Size Download File type/resource
GSM605626_hg18_wgEncodeCshlShortRnaSeqAlignmentsProstateCellShort.tagAlign.txt.gz 30.4 Mb (ftp)(http) TXT
GSM605626_hg18_wgEncodeCshlShortRnaSeqTransfragsProstateCellShort.broadPeak.txt.gz 13.4 Mb (ftp)(http) TXT
GSM605626_hg19_wgEncodeCshlShortRnaSeqProstateCellShortTransfrags.shortFrags.txt.gz 3.7 Mb (ftp)(http) TXT
GSM605626_hg19_wgEncodeCshlShortRnaSeqProstateCellTotalAln.bam 98.0 Mb (ftp)(http) BAM
GSM605626_hg19_wgEncodeCshlShortRnaSeqProstateCellTotalMinusRaw.bigWig 30.4 Mb (ftp)(http) BIGWIG
GSM605626_hg19_wgEncodeCshlShortRnaSeqProstateCellTotalPlusRaw.bigWig 30.4 Mb (ftp)(http) BIGWIG
Raw data provided as supplementary file
Processed data provided as supplementary file

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