|
| Status |
Public on Jul 07, 2022 |
| Title |
4NQO-KO-1 |
| Sample type |
SRA |
| |
|
| Source name |
esophagus
|
| Organism |
Mus musculus |
| Characteristics |
mice: C57BL/6
tissue: esophageal tumor
treatment: 4NQO induced-tumor
genotype: S100A14 CKO
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Esophageal tumors were removed, liquid nitrogen storage, and RNA was harvested using Trizol reagent.
RNA libraries were constructed using an Illumina TruSeq RNA Sample Preparation kit.
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Data processing |
Clean reads were obtained after the removal of reads containing adapter and ploy-N and having low quality.
Differential expression was assessed using DESeq by using read counts as input.
Assembly: mm9
Supplementary files format and content: tab-delimited text files include FPKM values for each Sample ...
Supplementary files format and content: Matrix table with raw gene counts for every gene and every sample
|
| |
|
| Submission date |
Apr 13, 2022 |
| Last update date |
Jul 07, 2022 |
| Contact name |
Xukun Li |
| E-mail(s) |
xk_li1987@126.com
|
| Phone |
13718129906
|
| Organization name |
NCC
|
| Department |
Department of Radiation Oncology
|
| Street address |
No.17 Panjiayuan Nanli, Chaoyang District
|
| City |
Beijing |
| ZIP/Postal code |
100021 |
| Country |
China |
| |
|
| Platform ID |
GPL24247 |
| Series (1) |
| GSE200772 |
Transcriptomes Analysis of 4NQO induced-esophageal tumors of Wild Type and S100A14 CKO mice |
|
| Relations |
| BioSample |
SAMN27568485 |
| SRA |
SRX14846528 |
