|
| Status |
Public on Jun 13, 2022 |
| Title |
MCF7-RBneg-birina, biol rep3 |
| Sample type |
SRA |
| |
|
| Source name |
MCF7
|
| Organism |
Homo sapiens |
| Characteristics |
cell line: MCF7
cell type: breast adenocarcinoma
genotype: RB1 deletion
treatment: Birinapant
time: 48 hours
|
| Extracted molecule |
total RNA |
| Extraction protocol |
TruSeq Stranded Total RNA, IDT-ILMN TruSeq RNA UD Indexes (96 Indexes)
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Description |
RS-03753135
|
| Data processing |
Trim adapters
Alignment to GRCh37 using STAR
Produce raw read counts using RSEM
The entire data prcessing was done using nf-core/rnaseq pipeline, version 3.3
Assembly: GRCh37
Supplementary files format and content: tab-delimited text files include raw read count generated by RSEM
|
| |
|
| Submission date |
Apr 01, 2022 |
| Last update date |
Jun 14, 2022 |
| Contact name |
Jianxin Wang |
| Organization name |
Roswell Park Comprehensive Cancer Center
|
| Department |
Molecular and Cellular Biology
|
| Street address |
665 Elm Street
|
| City |
Buffalo |
| State/province |
NY |
| ZIP/Postal code |
14203 |
| Country |
USA |
| |
|
| Platform ID |
GPL24676 |
| Series (1) |
| GSE199919 |
RB-loss determines selective resistance and novel vulnerabilities in breast cancer modelsRB loss |
|
| Relations |
| BioSample |
SAMN27175212 |
| SRA |
SRX14708360 |
