|
| Status |
Public on Mar 30, 2022 |
| Title |
2BQ0457 EV |
| Sample type |
SRA |
| |
|
| Source name |
Plasma
|
| Organism |
Homo sapiens |
| Characteristics |
condition: Healthy Subject
anatomical location: Entire cardiovascular system
rna source: extracellular vesicle
rna isolation kit: Homebrew Kit
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA Isolation method was . RNA Isolation kit was Homebrew Kit.
Library construction kit was Homebrew Kit. Samples were multiplexed. Type of Starting Material was total RNA.
|
| |
|
| Library strategy |
miRNA-Seq |
| Library source |
transcriptomic |
| Library selection |
size fractionation |
| Instrument model |
Illumina NextSeq 500 |
| |
|
| Description |
EXR-KWANG1plasmaEV2BQ0457-BS
|
| Data processing |
All FASTQ files were processed uniformly through the extra-cellular RNA processing toolkit (exceRpt), with an adapter sequence of [] and random barcode length [] (on []). Information about exceRpt is available at https://github.gersteinlab.org/exceRpt/.
Assembly: hg19
Supplementary files format and content: Each processed data file is a core results archive generated by exceRpt. The core results archive contains read counts for alignments to the different transcriptome libraries used by exceRpt (miRNA / piRNA / tRNA / GENCODE annotations / circRNA), taxonomy trees for exogenous rRNA and genomic reads aligned by exceRpt, and a variety of other files generated by exceRpt.
|
| |
|
| Submission date |
Mar 27, 2022 |
| Last update date |
Mar 31, 2022 |
| Contact name |
Kai Wang |
| E-mail(s) |
kwang@systemsbiology.org
|
| Organization name |
Institute for Systems Biology
|
| Street address |
401 Terry Ave N
|
| City |
Seattle |
| State/province |
WA |
| ZIP/Postal code |
98109 |
| Country |
USA |
| |
|
| Platform ID |
GPL18573 |
| Series (2) |
| GSE199505 |
Small RNA profile of 4 biofluids from healthy individuals (EVs) [EXR-KWANG1Nb3oPN-AN] |
| GSE199507 |
Small RNA profile of 4 biofluids from healthy individuals |
|
| Relations |
| BioSample |
SAMN27009547 |
| SRA |
SRX14628998 |
