|
Status |
Public on Mar 30, 2022 |
Title |
AC-066 EV |
Sample type |
SRA |
|
|
Source name |
Plasma
|
Organism |
Homo sapiens |
Characteristics |
condition: Healthy Subject anatomical location: Entire cardiovascular system rna source: extracellular vesicle rna isolation kit: Homebrew Kit
|
Extracted molecule |
total RNA |
Extraction protocol |
RNA Isolation method was . RNA Isolation kit was Homebrew Kit. Library construction kit was Homebrew Kit. Samples were multiplexed. Type of Starting Material was total RNA.
|
|
|
Library strategy |
miRNA-Seq |
Library source |
transcriptomic |
Library selection |
size fractionation |
Instrument model |
Illumina NextSeq 500 |
|
|
Description |
EXR-KWANG1plasmaEVACh066-BS
|
Data processing |
All FASTQ files were processed uniformly through the extra-cellular RNA processing toolkit (exceRpt), with an adapter sequence of [] and random barcode length [] (on []). Information about exceRpt is available at https://github.gersteinlab.org/exceRpt/. Assembly: hg19 Supplementary files format and content: Each processed data file is a core results archive generated by exceRpt. The core results archive contains read counts for alignments to the different transcriptome libraries used by exceRpt (miRNA / piRNA / tRNA / GENCODE annotations / circRNA), taxonomy trees for exogenous rRNA and genomic reads aligned by exceRpt, and a variety of other files generated by exceRpt.
|
|
|
Submission date |
Mar 27, 2022 |
Last update date |
Mar 31, 2022 |
Contact name |
Kai Wang |
E-mail(s) |
kwang@systemsbiology.org
|
Organization name |
Institute for Systems Biology
|
Street address |
401 Terry Ave N
|
City |
Seattle |
State/province |
WA |
ZIP/Postal code |
98109 |
Country |
USA |
|
|
Platform ID |
GPL18573 |
Series (2) |
GSE199504 |
Small RNA profile of 4 biofluids from healthy individuals C [EXR-KWANG15hiHRW-AN] |
GSE199507 |
Small RNA profile of 4 biofluids from healthy individuals |
|
Relations |
BioSample |
SAMN27009487 |
SRA |
SRX14628961 |