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Sample GSM5974293 Query DataSets for GSM5974293
Status Public on Mar 30, 2022
Title AC-066 EV
Sample type SRA
 
Source name Plasma
Organism Homo sapiens
Characteristics condition: Healthy Subject
anatomical location: Entire cardiovascular system
rna source: extracellular vesicle
rna isolation kit: Homebrew Kit
Extracted molecule total RNA
Extraction protocol RNA Isolation method was . RNA Isolation kit was Homebrew Kit.
Library construction kit was Homebrew Kit. Samples were multiplexed. Type of Starting Material was total RNA.
 
Library strategy miRNA-Seq
Library source transcriptomic
Library selection size fractionation
Instrument model Illumina NextSeq 500
 
Description EXR-KWANG1plasmaEVACh066-BS
Data processing All FASTQ files were processed uniformly through the extra-cellular RNA processing toolkit (exceRpt), with an adapter sequence of [] and random barcode length [] (on []). Information about exceRpt is available at https://github.gersteinlab.org/exceRpt/.
Assembly: hg19
Supplementary files format and content: Each processed data file is a core results archive generated by exceRpt. The core results archive contains read counts for alignments to the different transcriptome libraries used by exceRpt (miRNA / piRNA / tRNA / GENCODE annotations / circRNA), taxonomy trees for exogenous rRNA and genomic reads aligned by exceRpt, and a variety of other files generated by exceRpt.
 
Submission date Mar 27, 2022
Last update date Mar 31, 2022
Contact name Kai Wang
E-mail(s) kwang@systemsbiology.org
Organization name Institute for Systems Biology
Street address 401 Terry Ave N
City Seattle
State/province WA
ZIP/Postal code 98109
Country USA
 
Platform ID GPL18573
Series (2)
GSE199504 Small RNA profile of 4 biofluids from healthy individuals C [EXR-KWANG15hiHRW-AN]
GSE199507 Small RNA profile of 4 biofluids from healthy individuals
Relations
BioSample SAMN27009487
SRA SRX14628961

Supplementary file Size Download File type/resource
GSM5974293_sample_ISB145_07_AC-066_pe_fastq_KWANG1-Ref_Profiles_4_Biofluids-2017-11-22_CORE_RESULTS_v4.6.2.tar.gz 19.1 Mb (ftp)(http) TAR
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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