|
| Status |
Public on Mar 14, 2022 |
| Title |
T9 |
| Sample type |
SRA |
| |
|
| Source name |
CD8+ T cell
|
| Organism |
Mus musculus |
| Characteristics |
treatment: untreated
genotype: WT
cell type: CD8+ T cell
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA from was extracted according to the Single Cell 3' Reagent kits.
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2500 |
| |
|
| Data processing |
sample de-multiplexing and alignment was performed using Cell Ranger Single Cell Software Suite (v2.0.1)
Assembly: mm10 (using refdata-cellranger-mm10-1.2.0)
Supplementary files format and content: Processed files are raw count UMI matrices which are given by Cellranger pipeline and integrated Seurat-v3 object
|
| |
|
| Submission date |
Mar 11, 2022 |
| Last update date |
Mar 31, 2022 |
| Contact name |
Paul Gueguen |
| E-mail(s) |
paul.gueguen@unil.ch
|
| Organization name |
Institut Curie
|
| Department |
Inserm U932
|
| Street address |
26 rue D'Ulm
|
| City |
Paris |
| ZIP/Postal code |
75005 |
| Country |
France |
| |
|
| Platform ID |
GPL17021 |
| Series (2) |
| GSE198422 |
CD8+ T cell responsiveness to anti-PD-1 is epigenetically regulated by Suv39h1 in melanomas [scRNA-seq] |
| GSE198423 |
CD8+ T cell responsiveness to anti-PD-1 is epigenetically regulated by Suv39h1 in melanomas |
|
| Relations |
| BioSample |
SAMN26581330 |
| SRA |
SRX14438482 |
