|
| Status |
Public on Jul 05, 2022 |
| Title |
RE 8-3 Liver |
| Sample type |
SRA |
| |
|
| Source name |
liver
|
| Organism |
Mus musculus |
| Characteristics |
genotype/variation: RE
time point: ZT8
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Standard Illumina RNA-seq protocol
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Data processing |
Alignment to reference assembly mm10 and known splice junctions extracted from the RefSeq database performed using Tuxedo pipeline tophat
Read counting for each gene and normalization to FPKM values using Tuxedo pipeline
Genome_build: mm10
Supplementary_files_format_and_content: Gene expression results FPKM values) of the standard RNAseq analysis are reported in the genes_fpkm.csv file
|
| |
|
| Submission date |
Feb 09, 2022 |
| Last update date |
Jul 05, 2022 |
| Contact name |
Siwei Chen |
| E-mail(s) |
siweic@uci.edu
|
| Organization name |
University of California, Irvine
|
| Department |
Computer Science
|
| Lab |
Pierre Baldi
|
| Street address |
66304 Verano Road South
|
| City |
irvine |
| State/province |
CA |
| ZIP/Postal code |
92617 |
| Country |
USA |
| |
|
| Platform ID |
GPL24247 |
| Series (1) |
| GSE196430 |
The central clock suffices to drive the majority of circulatory metabolic rhythms |
|
| Relations |
| BioSample |
SAMN25812732 |
| SRA |
SRX14114562 |
