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Sample GSM5860125 Query DataSets for GSM5860125
Status Public on Feb 11, 2022
Title canine cortisol-secreting adrenocortical tumor 32
Sample type SRA
 
Source name cortisol-secreting adrenocortical tumor
Organism Canis lupus familiaris
Characteristics disease: canine cortisol-secreting adrenocortical tumor
Extracted molecule total RNA
Extraction protocol cells were trypsinized and stored in RLT. Total RNA was isolated using a RNeasy Mini Kit (Qiagen).
Sequencing libraries were prepared using CEL-Seq2
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NextSeq 500
 
Description ACT32
Data processing reads were demultiplexed and aligned to canine cDNA reference using the BWA
Genome_build: CanFam3.1
Supplementary_files_format_and_content: raw counts
 
Submission date Feb 04, 2022
Last update date Feb 11, 2022
Contact name Frank van Steenbeek
E-mail(s) f.g.vansteenbeek@uu.nl
Phone 0302532848
Organization name Utrecht University
Street address Yalelaan 104
City Utrecht
State/province Select State/Province
ZIP/Postal code 3584 CM
Country Netherlands
 
Platform ID GPL21400
Series (1)
GSE196108 Transcriptome sequencing reveals two subtypes of cortisol-secreting adrenocortical tumors in dogs and identifies CYP26B1 as a potential new therapeutic target
Relations
BioSample SAMN25648847
SRA SRX14042182

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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