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Sample GSM5860125 Query DataSets for GSM5860125
Status Public on Feb 11, 2022
Title canine cortisol-secreting adrenocortical tumor 32
Sample type SRA
Source name cortisol-secreting adrenocortical tumor
Organism Canis lupus familiaris
Characteristics disease: canine cortisol-secreting adrenocortical tumor
Extracted molecule total RNA
Extraction protocol cells were trypsinized and stored in RLT. Total RNA was isolated using a RNeasy Mini Kit (Qiagen).
Sequencing libraries were prepared using CEL-Seq2
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NextSeq 500
Description ACT32
Data processing reads were demultiplexed and aligned to canine cDNA reference using the BWA
Genome_build: CanFam3.1
Supplementary_files_format_and_content: raw counts
Submission date Feb 04, 2022
Last update date Feb 11, 2022
Contact name Frank van Steenbeek
Phone 0302532848
Organization name Utrecht University
Street address Yalelaan 104
City Utrecht
State/province Select State/Province
ZIP/Postal code 3584 CM
Country Netherlands
Platform ID GPL21400
Series (1)
GSE196108 Transcriptome sequencing reveals two subtypes of cortisol-secreting adrenocortical tumors in dogs and identifies CYP26B1 as a potential new therapeutic target
BioSample SAMN25648847
SRA SRX14042182

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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